Click here to switch to the map view.

The map label for this gene is yfdR [H]

Identifier: 194734033

GI number: 194734033

Start: 4317839

End: 4318378

Strand: Reverse

Name: yfdR [H]

Synonym: SeSA_A4441

Alternate gene names: 194734033

Gene position: 4318378-4317839 (Counterclockwise)

Preceding gene: 194735842

Following gene: 194735408

Centisome position: 91.7

GC content: 47.78

Gene sequence:

>540_bases
ATGAGTTTTATTCAAACACTTTCAGGTAAACAATTTGATTATCTCAGCGCAACTATTGACGACATTGATATTGAAGATAT
CGCAGTGGCGCTTTCCAATATTTGCCGCTTCTCCGGACATCTCCCTAAATTTTATAGCGTGGCGCAGCATTCCGTACTGT
GCAGCCAGCTTGTATCACCGGAGTTTGCCTTTGAAGCCCTGATGCACGACGCAGCCGAAGCGTATTGCCAGGATATCCCT
GCCCCATTAAAAGCGTTACTGCCTGATTATCGCGAGATTGAGAAACGTACCGATCAATTGATCCGCTTTAAGTTTGGCTT
GCCACTGGAAGAAGCCAGCGTAGTGAAGTATGCAGATCTGACCATGCTGGCAACTGAACGCCGCGATCTGGATATTGATG
ACAGTATTCCCTGGGTAATACTGGAAGGTATCCCCCCGACAGATTTATTCGAAATCTACCCCCTTCGCCCCGGTCTGGCT
TTCGGCCTGTTTATGGCCCGCTTTAATGAACTGATGGAGCTACGCCAATGTGCTGCATAA

Upstream 100 bases:

>100_bases
ATTGAAGTGTAATTCTGTTAATTATCGCCACCCGGCGAGGGATTCGCACAACCAAAATTCACGCGGTGCAGCGCGAAATA
AATTATAAGGAGAACCAACG

Downstream 100 bases:

>100_bases
AAGATAAAGAGTCTGTAGTGAAGGCAATCAGATCAAGACGTTTGTGGGAGCGCGTTGAAGGCGGTGCAGCATGAACATCG
ACAAACGTGCGCTGCGTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSFIQTLSGKQFDYLSATIDDIDIEDIAVALSNICRFSGHLPKFYSVAQHSVLCSQLVSPEFAFEALMHDAAEAYCQDIP
APLKALLPDYREIEKRTDQLIRFKFGLPLEEASVVKYADLTMLATERRDLDIDDSIPWVILEGIPPTDLFEIYPLRPGLA
FGLFMARFNELMELRQCAA

Sequences:

>Translated_179_residues
MSFIQTLSGKQFDYLSATIDDIDIEDIAVALSNICRFSGHLPKFYSVAQHSVLCSQLVSPEFAFEALMHDAAEAYCQDIP
APLKALLPDYREIEKRTDQLIRFKFGLPLEEASVVKYADLTMLATERRDLDIDDSIPWVILEGIPPTDLFEIYPLRPGLA
FGLFMARFNELMELRQCAA
>Mature_178_residues
SFIQTLSGKQFDYLSATIDDIDIEDIAVALSNICRFSGHLPKFYSVAQHSVLCSQLVSPEFAFEALMHDAAEAYCQDIPA
PLKALLPDYREIEKRTDQLIRFKFGLPLEEASVVKYADLTMLATERRDLDIDDSIPWVILEGIPPTDLFEIYPLRPGLAF
GLFMARFNELMELRQCAA

Specific function: Unknown

COG id: COG1896

COG function: function code R; Predicted hydrolases of HD superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082090, Length=178, Percent_Identity=67.4157303370787, Blast_Score=249, Evalue=5e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20270; Mature: 20138

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFIQTLSGKQFDYLSATIDDIDIEDIAVALSNICRFSGHLPKFYSVAQHSVLCSQLVSP
CCHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
EFAFEALMHDAAEAYCQDIPAPLKALLPDYREIEKRTDQLIRFKFGLPLEEASVVKYADL
HHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TMLATERRDLDIDDSIPWVILEGIPPTDLFEIYPLRPGLAFGLFMARFNELMELRQCAA
HHHHHCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SFIQTLSGKQFDYLSATIDDIDIEDIAVALSNICRFSGHLPKFYSVAQHSVLCSQLVSP
CHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
EFAFEALMHDAAEAYCQDIPAPLKALLPDYREIEKRTDQLIRFKFGLPLEEASVVKYADL
HHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TMLATERRDLDIDDSIPWVILEGIPPTDLFEIYPLRPGLAFGLFMARFNELMELRQCAA
HHHHHCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]