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The map label for this gene is ycbS [H]

Identifier: 194733954

GI number: 194733954

Start: 25762

End: 28428

Strand: Direct

Name: ycbS [H]

Synonym: SeSA_A0025

Alternate gene names: 194733954

Gene position: 25762-28428 (Clockwise)

Preceding gene: 194735713

Following gene: 194735351

Centisome position: 0.55

GC content: 54.14

Gene sequence:

>2667_bases
TTGGCGCAACGACGCCAGCACGCGTTTGTCCAGCTTCATGATGTTATGCGTAATCAGCTTTTCATGACGCGATATTACTC
CAGCGTAGCTAAACCCGTATTAACCCCGCTGGCGTTGGCTATCGCATTGGCGCCTGCGCCGGGGTGGGCGGAAAACTATT
TCAACCCGGCATTTCTGTCTGACGACCCGTCTGCGGTGGCCGACTTATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGA
ATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCGACCAGAGACATTGCCTTCCAGGCGGTGAAAACGACGGG
AAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGACGCCTGAAATGCTTAAAAATATGGGGGTAAACACCG
GGGCGTTTCCACTGTTGGCGAAGGCGGCGGCGGGAAGTTGCCCGGATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGC
TTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCGGCGATGGTTGCCAGCGCCAGAGGCTATATCCCACC
GCAATACTGGGATGAAGGTATTAACGCGTTGCTATTGAATTACACCTTTACCGGCGCGAATAGTCAGGATCGGAGCGCAG
GCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCCTTAATCTGGGGGCCTGGCGGTTACGCGACTACTCC
ACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGGCAGCACATCAGTACTTATCTGGAACGTGATGTGGT
CTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTCCGCATTATTCGACAGCATTCCTTTTCGCGGGCTAC
AACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAAGGCTTCGCGCCGACCATTCACGGCATTGCCAGAAGCAAC
GCGCAAGTGACCATTCGGCAAAACGGCTACATCATCAATCAGCGCTATGTGCCGCCCGGGGCATTTACTATTAATGATCT
CTATCCCACCGCCGCCAGCGGCGATTTGACTGTGGAAGTCAAAGAGTCTGACGGTTCTATTAATCGCTATAACGTGCCCT
ATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGCTGAAGTATGCGGCGACGGTGGCGGAGTATCGTAGCGATAGTAGT
CAAAAAGAGAAGGTGAAATTCACTCAGGCGACCTTGATATGGGGGTTACCGCATGGTTTTACGCTGTATGGCGGAACACA
ACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAATCTGGGCGACTGGGGCGCGGTGTCGCTGGATGTCA
CCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGCAATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCA
CAGTCAGGAACCAATTTACAGCTTATGGGCTATCGCTATTCAACCTCGGGCTTTTATACGCTGGATGATACCACGTGGAA
ACGGATGAGCGGCTATGACGATGACAGTCGGACTGACAGCGATAAAAGCAGGCCGGAATGGGCGGATTATTACAATCTTT
ATTATACCAGAAGGGGGAAAGTACAACTCGATATCAATCAACAGCTAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGT
CAACAAAGTTACTGGCACACTGATGAAAAGGATTCTTTGTTGCAGGTGGGATACAGCGATACGCTGGCGGGTATTGCATG
GAGTGTTTCTTATAACAATAACAAATCCGCAGGCGATGCGGAGCGCGATCAAATTTTCGCGCTGAATATCTCGGTGCCGC
TAAGTCAATGGCTGCAACACGATGATGAGGTTACGCGCCATCACAATGTTTACGCTACCTTTAGCACCAGTACGGACAAA
CAGCATAACGTTACGCAGAATGCGGGCCTTAGCGGCACACTGCTGGACGAAAACAATCTTAGTTACAACATACAGCAAGG
TTATCAAAATCACGGTATTGGCGAAAGCGGCTCCGCCAGCCTGGAATACGATGGGGCGAAAGGCAACGCCAACATTGGCT
ATAACGTTAGCGATAACGGCGATTACCAGCAGGTGAATTATGGCCTGAGCGGCGGCCTGGTGGCGCACGTGCATGGAGTG
ACGCTAAGCCAGCCGCTGGGCAATACCAATATTTTGATTGCCGCGCCGGGCGCAGCCAACGTCGGCGTTGTCGACCAGCC
GGGTATTCATACGGACGCGCGTGGCTATGCGGTGGTGCCGTATGCGACGACATATCGCCAAAACCGTATGGCGCTGGACG
TTAACGCGATGGCTGATGATGTCGATATTGATGACGCGGTGACTCGCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCC
CGCTTTAAAGCGCGAGTCGGCGCGCGTGCCCTGGTAACGCTGAATCATAACGGTAAGCCTGTACCCTTTGGCGCAACGGT
GACGGTGAATGATCGTCATGCGGAGGCGATTGTTGACGAGGCCGGGGAAGTCTATCTTTCCGGGTTGTCAGCGCAAGGCA
TTCTGCACGTTCGCTGGGGGAACCTGCCGGATCAACAGTGTGTCGCGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTG
AGTCGACAACATGCGGAGTGTCATTAA

Upstream 100 bases:

>100_bases
AGCGCGGGGAAAAAACTGCCGAATACTATGGTACCGCCGAAAGGCGCGATCACTCTCCCGGCGACGCCCGGCCAGGTATC
TTTGCGCACGGTAAACGATT

Downstream 100 bases:

>100_bases
ATGAAAATACCTCTTTTATTTGCTCTGCTGGTGGGAAGTGTCGTATCGCAGTACGCATTCGCAGACGTGTGTAAAAACGT
TAACGGTGTACCTTCCAGTA

Product: outer membrane usher protein FimD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 888; Mature: 887

Protein sequence:

>888_residues
MAQRRQHAFVQLHDVMRNQLFMTRYYSSVAKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAG
MYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTR
FDFAQQRLDISIPQAAMVASARGYIPPQYWDEGINALLLNYTFTGANSQDRSAGGSAENSYFLGLNSGLNLGAWRLRDYS
TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSIPFRGLQLASDDNMLPDSMKGFAPTIHGIARSN
AQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSS
QKEKVKFTQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA
QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGS
QQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDK
QHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGSASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHVHGV
TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLA
RFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGILHVRWGNLPDQQCVASYHLSSSRQIL
SRQHAECH

Sequences:

>Translated_888_residues
MAQRRQHAFVQLHDVMRNQLFMTRYYSSVAKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAG
MYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTR
FDFAQQRLDISIPQAAMVASARGYIPPQYWDEGINALLLNYTFTGANSQDRSAGGSAENSYFLGLNSGLNLGAWRLRDYS
TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSIPFRGLQLASDDNMLPDSMKGFAPTIHGIARSN
AQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSS
QKEKVKFTQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA
QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGS
QQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDK
QHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGSASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHVHGV
TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLA
RFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGILHVRWGNLPDQQCVASYHLSSSRQIL
SRQHAECH
>Mature_887_residues
AQRRQHAFVQLHDVMRNQLFMTRYYSSVAKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAGM
YRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRF
DFAQQRLDISIPQAAMVASARGYIPPQYWDEGINALLLNYTFTGANSQDRSAGGSAENSYFLGLNSGLNLGAWRLRDYST
WNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSIPFRGLQLASDDNMLPDSMKGFAPTIHGIARSNA
QVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQ
KEKVKFTQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLAQ
SGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQ
QSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDKQ
HNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGSASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHVHGVT
LSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLAR
FKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGILHVRWGNLPDQQCVASYHLSSSRQILS
RQHAECH

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=845, Percent_Identity=53.491124260355, Blast_Score=904, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=890, Percent_Identity=50.3370786516854, Blast_Score=859, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=870, Percent_Identity=46.551724137931, Blast_Score=769, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=865, Percent_Identity=39.3063583815029, Blast_Score=568, Evalue=1e-163,
Organism=Escherichia coli, GI1786332, Length=852, Percent_Identity=30.6338028169014, Blast_Score=364, Evalue=1e-101,
Organism=Escherichia coli, GI1788427, Length=820, Percent_Identity=30.4878048780488, Blast_Score=353, Evalue=3e-98,
Organism=Escherichia coli, GI87081778, Length=829, Percent_Identity=28.5886610373945, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1789610, Length=770, Percent_Identity=25.8441558441558, Blast_Score=139, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 96666; Mature: 96535

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQRRQHAFVQLHDVMRNQLFMTRYYSSVAKPVLTPLALAIALAPAPGWAENYFNPAFLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCCCCCC
DDPSAVADLSTFSRNAQAAGMYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRAC
CCCHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEHHHHHHHHHHCCCCCCCCCCCCEEE
LTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRFDFAQQRLDISIPQAAMVAS
CCHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHH
ARGYIPPQYWDEGINALLLNYTFTGANSQDRSAGGSAENSYFLGLNSGLNLGAWRLRDYS
CCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECC
TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSIPFRGLQLASDDN
CCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHCCCCCCEEECCCCC
MLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEV
CCCCHHHCCCHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEECCCCCCCCCCEEEEE
KESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKFTQATLIWGLPHGF
ECCCCCEEEECCCCHHCCHHHCCCCEEEEHHHHHHHCCCCHHHHEEEEEEEEEEECCCCE
TLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA
EEECCCEECCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCEEHHHHHHHH
QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGK
CCCCCEEEEEEEECCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCHHCEEEEEEEECCC
VQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDA
EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCC
ERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDKQHNVTQNAGLSGTLLDENNL
CCCEEEEEEECCCHHHHHCCCHHHHHCCEEEEEEECCCCCCCCCHHCCCCEEEEEECCCC
SYNIQQGYQNHGIGESGSASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHVHGV
EEEECCCCCCCCCCCCCCCEEEECCCCCCCEECEEECCCCCEEEEECCCCCCEEEEEECE
TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADD
EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCCEEEEEECCCCC
VDIDDAVTRVVPTEGALVLARFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDE
CCCHHHHHEEECCCCCEEEEEHHHCCCCEEEEEECCCCCCCCCCCEEEECCCHHHHHHHC
AGEVYLSGLSAQGILHVRWGNLPDQQCVASYHLSSSRQILSRQHAECH
CCEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
AQRRQHAFVQLHDVMRNQLFMTRYYSSVAKPVLTPLALAIALAPAPGWAENYFNPAFLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCCCCCC
DDPSAVADLSTFSRNAQAAGMYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRAC
CCCHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEHHHHHHHHHHCCCCCCCCCCCCEEE
LTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRFDFAQQRLDISIPQAAMVAS
CCHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHH
ARGYIPPQYWDEGINALLLNYTFTGANSQDRSAGGSAENSYFLGLNSGLNLGAWRLRDYS
CCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECC
TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSIPFRGLQLASDDN
CCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHCCCCCCEEECCCCC
MLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEV
CCCCHHHCCCHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEECCCCCCCCCCEEEEE
KESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKFTQATLIWGLPHGF
ECCCCCEEEECCCCHHCCHHHCCCCEEEEHHHHHHHCCCCHHHHEEEEEEEEEEECCCCE
TLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA
EEECCCEECCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCEEHHHHHHHH
QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGK
CCCCCEEEEEEEECCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCHHCEEEEEEEECCC
VQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDA
EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCC
ERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDKQHNVTQNAGLSGTLLDENNL
CCCEEEEEEECCCHHHHHCCCHHHHHCCEEEEEEECCCCCCCCCHHCCCCEEEEEECCCC
SYNIQQGYQNHGIGESGSASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHVHGV
EEEECCCCCCCCCCCCCCCEEEECCCCCCCEECEEECCCCCEEEEECCCCCCEEEEEECE
TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADD
EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCCEEEEEECCCCC
VDIDDAVTRVVPTEGALVLARFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDE
CCCHHHHHEEECCCCCEEEEEHHHCCCCEEEEEECCCCCCCCCCCEEEECCCHHHHHHHC
AGEVYLSGLSAQGILHVRWGNLPDQQCVASYHLSSSRQILSRQHAECH
CCEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]