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The map label for this gene is faeD [H]

Identifier: 194733941

GI number: 194733941

Start: 4455678

End: 4458116

Strand: Direct

Name: faeD [H]

Synonym: SeSA_A4579

Alternate gene names: 194733941

Gene position: 4455678-4458116 (Clockwise)

Preceding gene: 194737884

Following gene: 194736277

Centisome position: 94.62

GC content: 63.22

Gene sequence:

>2439_bases
ATGAACGGGAATAACGTAAGACAGCCAGCCTGCCAGATGTCTTTTCGCCATGCCGTGCTGGCATTTGCGATAGCGGTTGC
CCTGGGCAGCGGTACCGCAAGTGCCGGAGAGAAACTGGACATGTCCTTTATTCAGGGCGGGGCGGGGATTAACCCTGAGG
TCTGGGCGGCGCTGAACGGAGATTATGCGCCGGGGCGCTACCTGGTGGACCTGTCCCTGAACGGGAAGGATATCGGGAAG
CGGATCCTGGACGTAACACCACAGGACAGCGAAGCGCTGTGTCTGTCAGAAGCGTGGCTGGCAAAGGCCGGAATTTATGT
CAGCGCGGAGTACTTCCGTAAGGGATATGACGCCACGCGGCAGTGCTGGGTGCTGGCGAAAGCGCCGGCGGTGAAGGTGG
ACTTTGATGTCGCCACCCAGAGCCTGTCGCTGGCCATTCCGCAGAAAGGACTGGTGAAAATGCCGGAGAACGTGGAGTGG
GACTACGGCACGGAGGCGTTCCGGATGAACTACAACGCGAACGCCAACAGCGGGCGGTACAACACGTCGGCGTTCGGCTC
AGCAGACCTGAAGGCCAACATCGGTCGCTGGGTGGTGAGCTCGTCAGCCACAGCCAGCACCGGGGATGGCGGGAGCAACG
AGGCCACGATAAACATGTTCACGGCCACCCGGGCCATCCGCTCCCTGAGTGCGGACCTGGCGGTCGGGAAGACCTCGACC
GGTGACAGCCTGCTGGGCAGTACCGGCACGTACGGGGTGTCCCTGTCGCGGAACAACAGCATGAAGCCGGGCAACCTGGG
GTATACCCCGGTGTTCAGCGGCATTGCGAACGGTCCCTCAAGGGTGACCCTGACCCAGAACGGCAGGATGCTGTACTCGG
GGATGATGCCGTCCGGGCCGTTCTCCGTCACGGATGTGCCGCTGTACAGCAGCGGGGACGTGACGATGACCGTCACCGGG
GATGACGGGCGGGTGCAGACGCAGGTCTTCCCGCTGTCGGTAATGGCCGGGCAGCTGAGTCCGGGACAGCACGAGTTCAG
CGTGGCGGCCGGGATACCGGACGACGACAGCGACCTGGAGGGCGGGGTGTTTGCCGCGTCATACGGGTATGGTCTGGACG
GGCTGACTCTGCGCACGGGAGGCGTGTTCAACCAGGACTGGCAGGGCGCCAGTGCCGGTGCGGTACTGGGACTCGGTTAT
CTGGGGGCGGTGTCTGCTGACGGCGCTTATGCCACGGCGAAGTACCGGGACGGCAGTCGCAGCGGGAACAAGGTGAAACT
GGCCTGGAGCAAACAGCTGGCGCTGACGAACACCGGCCTGCGGGTGAGCTGGTCACATCAGAGTGAGGAATATGAGGACA
TGTCCTCCTTTGACCCGGCTGAAACATGGCTGCAGCAGAACCAGGGGCGCCGGACCCGGGATGAGTGGAATGCGGGCATC
AGCCAGCCGGTGGGAGGGCTGTTCAGCCTGTCGGCGTCGGGATGGCAGCGGAGCTATTACCCGGCCTCCACGACCGGCAG
TTACCGGTACGCTGATGACAACGGTAAGGAGACAGGAATTACCGGTACCCTGAGCACACAGATAAAAAGCGTCAGCCTGA
ATCTGGGCTGGTCCGGGTCCCGGAACATGAACGGGGAGAACACCTGGTCGGCCTCCGCGTCGGTGTCGGTGCCGTTCACC
CTGTTTGAGCGGAAGTACAGCAGCAGTACCACGGTGAGCACCGGTAAAGATGGCGGCACCGGCGTCAGTACCGGTATCTC
CGGGGCCCTGAACGACCGGTTCAGCTACGGTCTGGGCGGCGGCCGTGACAGTGACGGCGGTATCAGCAGTTACCTGAACG
CCGCCTACAGCGGCGACCGGGCGAACCTGAACGGCACGGTGAACCACTCGTCCGGTTCGGGCACCAGTGGTTCGGTGTCA
GCCAGCGGTTCGGTACTGGCGGTGCCGGCGGCGCGGGACATCATGTTCAGCCGGACCACCGGCGACACGGTGGCGGTGGT
GAGCGTGAAGGACACGCCGGGGGTGAAGGTGATGTCCGGCAATGAAACGTCGGACAGTGACGGAAACCTGGTAGTACCGC
TGAACAGCTATGACTGGAATACGGTGACCATAGATGCGGGCACGCTGCCGCTGGACACGGAGCTGTCCACGACCAGCCGG
AAGGTGGTGCCGACGGACAGGGCGGTGGTGTGGATGCCGTTTGATGCTCTGAAGGTGCACCGTTACCTGCTGCAGGTGAG
GATGCCGGACGGGGCCTTTGTGCCGGGCGGCACATGGGCACGGGACAGCAATAACACGCCGCTGGGCTTTGTGGCGAACA
ACGGCGTGCTGATGATTAACGCGGTGGACCGCCCCGGCGATATCACGCTGGGACAGTGCCGGATACCTGCGGCGAAACTG
CAGGAGACGGCGAAACTACAGGAAATTACGTGCGAATAA

Upstream 100 bases:

>100_bases
GTTCCGGTTTCGTGCGCAGCCGGTGTTTCCGGCGGACGTGAAGGCGGGTGAGTACAACGGCGCCCTGACCTTTGTGGTCA
CCTACCAGTAAGGAATGCTG

Downstream 100 bases:

>100_bases
GCATAACCGGACAATGATGACGATGAAACAGACCCAGAAAATGCGTTCTTTTTTCCGTAACAGAGTGACGAAGGCGCTGG
GAATGACCCTGGCCCTGATG

Product: CshB porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 812; Mature: 812

Protein sequence:

>812_residues
MNGNNVRQPACQMSFRHAVLAFAIAVALGSGTASAGEKLDMSFIQGGAGINPEVWAALNGDYAPGRYLVDLSLNGKDIGK
RILDVTPQDSEALCLSEAWLAKAGIYVSAEYFRKGYDATRQCWVLAKAPAVKVDFDVATQSLSLAIPQKGLVKMPENVEW
DYGTEAFRMNYNANANSGRYNTSAFGSADLKANIGRWVVSSSATASTGDGGSNEATINMFTATRAIRSLSADLAVGKTST
GDSLLGSTGTYGVSLSRNNSMKPGNLGYTPVFSGIANGPSRVTLTQNGRMLYSGMMPSGPFSVTDVPLYSSGDVTMTVTG
DDGRVQTQVFPLSVMAGQLSPGQHEFSVAAGIPDDDSDLEGGVFAASYGYGLDGLTLRTGGVFNQDWQGASAGAVLGLGY
LGAVSADGAYATAKYRDGSRSGNKVKLAWSKQLALTNTGLRVSWSHQSEEYEDMSSFDPAETWLQQNQGRRTRDEWNAGI
SQPVGGLFSLSASGWQRSYYPASTTGSYRYADDNGKETGITGTLSTQIKSVSLNLGWSGSRNMNGENTWSASASVSVPFT
LFERKYSSSTTVSTGKDGGTGVSTGISGALNDRFSYGLGGGRDSDGGISSYLNAAYSGDRANLNGTVNHSSGSGTSGSVS
ASGSVLAVPAARDIMFSRTTGDTVAVVSVKDTPGVKVMSGNETSDSDGNLVVPLNSYDWNTVTIDAGTLPLDTELSTTSR
KVVPTDRAVVWMPFDALKVHRYLLQVRMPDGAFVPGGTWARDSNNTPLGFVANNGVLMINAVDRPGDITLGQCRIPAAKL
QETAKLQEITCE

Sequences:

>Translated_812_residues
MNGNNVRQPACQMSFRHAVLAFAIAVALGSGTASAGEKLDMSFIQGGAGINPEVWAALNGDYAPGRYLVDLSLNGKDIGK
RILDVTPQDSEALCLSEAWLAKAGIYVSAEYFRKGYDATRQCWVLAKAPAVKVDFDVATQSLSLAIPQKGLVKMPENVEW
DYGTEAFRMNYNANANSGRYNTSAFGSADLKANIGRWVVSSSATASTGDGGSNEATINMFTATRAIRSLSADLAVGKTST
GDSLLGSTGTYGVSLSRNNSMKPGNLGYTPVFSGIANGPSRVTLTQNGRMLYSGMMPSGPFSVTDVPLYSSGDVTMTVTG
DDGRVQTQVFPLSVMAGQLSPGQHEFSVAAGIPDDDSDLEGGVFAASYGYGLDGLTLRTGGVFNQDWQGASAGAVLGLGY
LGAVSADGAYATAKYRDGSRSGNKVKLAWSKQLALTNTGLRVSWSHQSEEYEDMSSFDPAETWLQQNQGRRTRDEWNAGI
SQPVGGLFSLSASGWQRSYYPASTTGSYRYADDNGKETGITGTLSTQIKSVSLNLGWSGSRNMNGENTWSASASVSVPFT
LFERKYSSSTTVSTGKDGGTGVSTGISGALNDRFSYGLGGGRDSDGGISSYLNAAYSGDRANLNGTVNHSSGSGTSGSVS
ASGSVLAVPAARDIMFSRTTGDTVAVVSVKDTPGVKVMSGNETSDSDGNLVVPLNSYDWNTVTIDAGTLPLDTELSTTSR
KVVPTDRAVVWMPFDALKVHRYLLQVRMPDGAFVPGGTWARDSNNTPLGFVANNGVLMINAVDRPGDITLGQCRIPAAKL
QETAKLQEITCE
>Mature_812_residues
MNGNNVRQPACQMSFRHAVLAFAIAVALGSGTASAGEKLDMSFIQGGAGINPEVWAALNGDYAPGRYLVDLSLNGKDIGK
RILDVTPQDSEALCLSEAWLAKAGIYVSAEYFRKGYDATRQCWVLAKAPAVKVDFDVATQSLSLAIPQKGLVKMPENVEW
DYGTEAFRMNYNANANSGRYNTSAFGSADLKANIGRWVVSSSATASTGDGGSNEATINMFTATRAIRSLSADLAVGKTST
GDSLLGSTGTYGVSLSRNNSMKPGNLGYTPVFSGIANGPSRVTLTQNGRMLYSGMMPSGPFSVTDVPLYSSGDVTMTVTG
DDGRVQTQVFPLSVMAGQLSPGQHEFSVAAGIPDDDSDLEGGVFAASYGYGLDGLTLRTGGVFNQDWQGASAGAVLGLGY
LGAVSADGAYATAKYRDGSRSGNKVKLAWSKQLALTNTGLRVSWSHQSEEYEDMSSFDPAETWLQQNQGRRTRDEWNAGI
SQPVGGLFSLSASGWQRSYYPASTTGSYRYADDNGKETGITGTLSTQIKSVSLNLGWSGSRNMNGENTWSASASVSVPFT
LFERKYSSSTTVSTGKDGGTGVSTGISGALNDRFSYGLGGGRDSDGGISSYLNAAYSGDRANLNGTVNHSSGSGTSGSVS
ASGSVLAVPAARDIMFSRTTGDTVAVVSVKDTPGVKVMSGNETSDSDGNLVVPLNSYDWNTVTIDAGTLPLDTELSTTSR
KVVPTDRAVVWMPFDALKVHRYLLQVRMPDGAFVPGGTWARDSNNTPLGFVANNGVLMINAVDRPGDITLGQCRIPAAKL
QETAKLQEITCE

Specific function: Involved in the export and assembly of K88ab fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=744, Percent_Identity=27.2849462365591, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI1786332, Length=874, Percent_Identity=24.8283752860412, Blast_Score=159, Evalue=1e-39,
Organism=Escherichia coli, GI1788427, Length=834, Percent_Identity=24.4604316546763, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1786744, Length=823, Percent_Identity=25.273390036452, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1790772, Length=855, Percent_Identity=24.7953216374269, Blast_Score=142, Evalue=1e-34,
Organism=Escherichia coli, GI1787172, Length=806, Percent_Identity=25.4342431761787, Blast_Score=142, Evalue=1e-34,
Organism=Escherichia coli, GI1789610, Length=813, Percent_Identity=23.6162361623616, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI87081778, Length=446, Percent_Identity=25.5605381165919, Blast_Score=125, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 85365; Mature: 85365

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGNNVRQPACQMSFRHAVLAFAIAVALGSGTASAGEKLDMSFIQGGAGINPEVWAALNG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCCCCEEEEECC
DYAPGRYLVDLSLNGKDIGKRILDVTPQDSEALCLSEAWLAKAGIYVSAEYFRKGYDATR
CCCCCEEEEEEECCCHHHHHHHEECCCCCCCEEEHHHHHHHHCCEEEEHHHHHCCCCCCC
QCWVLAKAPAVKVDFDVATQSLSLAIPQKGLVKMPENVEWDYGTEAFRMNYNANANSGRY
EEEEEECCCEEEEEHHHCCCEEEEECCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCC
NTSAFGSADLKANIGRWVVSSSATASTGDGGSNEATINMFTATRAIRSLSADLAVGKTST
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCEEECCCCC
GDSLLGSTGTYGVSLSRNNSMKPGNLGYTPVFSGIANGPSRVTLTQNGRMLYSGMMPSGP
CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCEEEEECCCCCCC
FSVTDVPLYSSGDVTMTVTGDDGRVQTQVFPLSVMAGQLSPGQHEFSVAAGIPDDDSDLE
CCEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCC
GGVFAASYGYGLDGLTLRTGGVFNQDWQGASAGAVLGLGYLGAVSADGAYATAKYRDGSR
CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEHHHEEECCCCCEEEEEECCCCC
SGNKVKLAWSKQLALTNTGLRVSWSHQSEEYEDMSSFDPAETWLQQNQGRRTRDEWNAGI
CCCEEEEEEECEEEEECCCEEEEECCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHCCCC
SQPVGGLFSLSASGWQRSYYPASTTGSYRYADDNGKETGITGTLSTQIKSVSLNLGWSGS
CCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCC
RNMNGENTWSASASVSVPFTLFERKYSSSTTVSTGKDGGTGVSTGISGALNDRFSYGLGG
CCCCCCCCCCCCCEEECCHHEEEHHCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCC
GRDSDGGISSYLNAAYSGDRANLNGTVNHSSGSGTSGSVSASGSVLAVPAARDIMFSRTT
CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCCCCEEEEECC
GDTVAVVSVKDTPGVKVMSGNETSDSDGNLVVPLNSYDWNTVTIDAGTLPLDTELSTTSR
CCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCC
KVVPTDRAVVWMPFDALKVHRYLLQVRMPDGAFVPGGTWARDSNNTPLGFVANNGVLMIN
EECCCCCEEEEECHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEE
AVDRPGDITLGQCRIPAAKLQETAKLQEITCE
ECCCCCCEEECEEECCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNGNNVRQPACQMSFRHAVLAFAIAVALGSGTASAGEKLDMSFIQGGAGINPEVWAALNG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCCCCEEEEECC
DYAPGRYLVDLSLNGKDIGKRILDVTPQDSEALCLSEAWLAKAGIYVSAEYFRKGYDATR
CCCCCEEEEEEECCCHHHHHHHEECCCCCCCEEEHHHHHHHHCCEEEEHHHHHCCCCCCC
QCWVLAKAPAVKVDFDVATQSLSLAIPQKGLVKMPENVEWDYGTEAFRMNYNANANSGRY
EEEEEECCCEEEEEHHHCCCEEEEECCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCC
NTSAFGSADLKANIGRWVVSSSATASTGDGGSNEATINMFTATRAIRSLSADLAVGKTST
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCEEECCCCC
GDSLLGSTGTYGVSLSRNNSMKPGNLGYTPVFSGIANGPSRVTLTQNGRMLYSGMMPSGP
CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCEEEEECCCCCCC
FSVTDVPLYSSGDVTMTVTGDDGRVQTQVFPLSVMAGQLSPGQHEFSVAAGIPDDDSDLE
CCEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCC
GGVFAASYGYGLDGLTLRTGGVFNQDWQGASAGAVLGLGYLGAVSADGAYATAKYRDGSR
CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEHHHEEECCCCCEEEEEECCCCC
SGNKVKLAWSKQLALTNTGLRVSWSHQSEEYEDMSSFDPAETWLQQNQGRRTRDEWNAGI
CCCEEEEEEECEEEEECCCEEEEECCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHCCCC
SQPVGGLFSLSASGWQRSYYPASTTGSYRYADDNGKETGITGTLSTQIKSVSLNLGWSGS
CCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCC
RNMNGENTWSASASVSVPFTLFERKYSSSTTVSTGKDGGTGVSTGISGALNDRFSYGLGG
CCCCCCCCCCCCCEEECCHHEEEHHCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCC
GRDSDGGISSYLNAAYSGDRANLNGTVNHSSGSGTSGSVSASGSVLAVPAARDIMFSRTT
CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCCCCEEEEECC
GDTVAVVSVKDTPGVKVMSGNETSDSDGNLVVPLNSYDWNTVTIDAGTLPLDTELSTTSR
CCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCC
KVVPTDRAVVWMPFDALKVHRYLLQVRMPDGAFVPGGTWARDSNNTPLGFVANNGVLMIN
EECCCCCEEEEECHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEE
AVDRPGDITLGQCRIPAAKLQETAKLQEITCE
ECCCCCCEEECEEECCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2870470; 8577257; 1713284 [H]