| Definition | Salmonella enterica subsp. enterica serovar Newport str. SL254 chromosome, complete genome. |
|---|---|
| Accession | NC_011080 |
| Length | 4,827,641 |
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Identifier: 194446310
GI number:
Start: 207231
End: 209777
Strand: Reverse
Name: Not Available
Synonym: SNSL254_A0191
Alternate gene names: NA
Gene position: NA
Preceding gene: 194442367
Following gene: 194445694
Centisome position: NA
GC content: NA
Gene sequence:
>2547_bases ATGCGCAAAAGGCAACACCGGGTATTTTATTTATCGCGCTGCGCTGTGTGTATCGCGCTGGGCAGCACGTTCGCACACGT TGCATGGGCGCGCGACTATTTCAATCCGGCATTTATTGAAAACCATGGGCAGGCGAGTCGCACAAGCGTCGATCTGTCGA CATTTGATAACGACAAAAGCCAGCTGCCAGGCACCTATTACGTCACTATCAATATCAATAAAACAGAAATCGGCGCGCGA AACGTTGATTTTCAACTCACGACGCTCAGTGACGGTCAACAGGCATTACAGGGCTGTTTACGGCTCCAGGAACTAAAAGA TAACGGCGTCAAAACCGACCTTTTTCCAACGCTGGAGAGTGAAAAAGGCTGCGTCGATCTCAGCGTTATCCCCGGCGCCA GCCAGCGGTTTGATTTTCAGCAACAGGCATTATCAGTAAGCATCCCGCAACTCTACATCGCCAACAACGCACGCGGCTAC GTACCGCCGGAAAAGTGGCAGGAGGGGATTACCGCGCTGATGCTGAACTACAGCTTCAGCGGCTATAAAGAGTACGGTTC CAGTGAGGATTCCGACGATGCGGAATCGAAGTATCTCGCTCTCCAGCCGGGTTTTAACCTCGGGCCGTGGCGTTTTCGCA ACTACAGTAACTGGAGTTCAAATAACGGCGAGAGCGGTAGCTGGAACAGCGTTTATAACTATTTACAGCGCGACATTATC GCGCTGAAAAGCCAGTTCACCGCCGGAGACAGCAATACGCCATCCGACGTGTTCGACAGCGTACCTTTTCGCGGCCTCCA GCTCACCTCTGACGATCAAATGCAGCCCAACAGCCAGCGTGGTTACGCCCCGACGATTCGCGGCATCGCCCGCTCAAACG CGCAGGTTATCGTGCGGCAAAACGGCTATATCGCCTATCAGACCGCCGTTTCGCCGGGCGAATTTGAAATCAACGATATG TTTCCCACCGGCAGCAACGGCGACTATGACGTGACGGTAAAAGAAACCGACGGCAGCGAACAGCACTTTATCGTGCCCTA CTCTTCGCTGCCGATTCTGCAGCGCACCGGACGGGCAAAATACAGCGTGACCGTGGGTAAATATCGCGATTATAACAACC ACACGCTGGACGACTTCGGCCAGGCGACCTTGCTGTACGGCCTGCCGTGGGGCATCACCCTGTACGGCGGCAGCCAGATT GCCGGCGATAAATACCAGTCCGTCGCCTTCGGCGTCGGGCAAAATATGCAGATGCTGGGGGCCATTTCCCTGGACGGCAT CTGGTCGCACGCCAAATTTGACGATGGCCGCAAAGAAATCGGGCAATCCTGGCGCGTCCGCTACAGCAAGGGCGTCGTCA GTACGGGCACCACGTTTTCGCTGGCCGGCTATCGTTACGCCAGCGAAAACTACAATTCGCTGAGCGAGGTGATCAACCCG GACGACGATTTTTATGATAACTACGGCAAGCGCCATAATCGTTTCGAAGCTTCGGTCAACCAGCAAATTAGCAATACGCT CGGTTCCTTAACGCTAAGTTGGGTCAAAGAAGATTACTGGCACAGCGCGCAGCAGATGGAATCCCTGAGCGCCAGCTACA ACAATAGCTGGGGTCCGGTGAGCTATACGCTGAGCTACAGCTATAACAAAAACACCTACCAGTACCGTTCGGGCAATGAC GATGATGACAACGACGACGATCGTTATAACCAGAACGATCGGCTGTTCACGCTGTCGCTGCACGTTCCGTTTACGGTGTT CGATTCCAGGCTATACGCCAGCTATATGCTGAACACGCGTAAGCACGATGCCACGGTGAACAGCACCACCCTTAGCGGCA CCGCGCTGCGTGACAGAAACCTGAACTGGTCGTTACAGCAAAGCCACAGCACACAAGACGGTGATTCCGGCGGGGTAAAC GCCAGCTATAAAGGCACTTATGCCAACCTCAACGCCGGTTACAATCAGTCGCCAGATAGCCAACAGGTCAGCTACGGCAT CAGCGGCGGCATTCTGGCGCACGAAAACGGTATTACCCTGAGCCAGCCGATTACCGGCGCGGCGATTTTAATTAAAGCGC CCGGCGCCAGCGGCGTTTCGGTTGAAAACCAGACCGGCGTCGCCACCGACTTCCGGGGTTATACGGTGATCCCCAACGTC ACGCCGTATTATCGCTACGATATCTCGCTCGACAGCAGCACGTTTGCTGACAACGTGGATATTCCGCTCAACAACCAGAC CGTCTACCCGACGCGTAATGCGGTGGTGCGCGCGGCGTATGACACGCATAAGGGCTATCGCGTGTTGTTAACGCTGACGC GCAGCAATGGCGAGCCCGTGCCCTTTGGCGCGACGGCAAGCGTCGATGGGCAGGATGCGAACCTGGCCAGTATCGTCGGC GATAAAGGCCAGGTCTTCCTCAGCGGCCTGCCGGAAGAGGGCCTGCTGCTGGTGAACTGGGGAAGCGCCTCTTGCCGCAC GGATTACCGCCTGGATATCAGCAAAAATATGAACGGCATAGTGATGGCGAACGCCGTCTGCCAGTGA
Upstream 100 bases:
>100_bases CCAGCGGCCCGATTGTCTGGTCTATCATCAACGATTTTGGCGGTACTGGCCCCGAACATAAACAAACGCCTTGAGAAGAG TGACAGGGATGAGAGTGCCG
Downstream 100 bases:
>100_bases GGAACACAATGAAGAATTTATGGATGCTGCTGGCGCTGTCGCTATTTTCAGGCCATGCGCTGGCAGACGGAACGATGGGC AACGGAAGCGGCTGGTGTCA
Product: outer membrane usher protein FimD
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>848_residues MRKRQHRVFYLSRCAVCIALGSTFAHVAWARDYFNPAFIENHGQASRTSVDLSTFDNDKSQLPGTYYVTININKTEIGAR NVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGESGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKETDGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHTLDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSGND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRTDYRLDISKNMNGIVMANAVCQ
Sequences:
NA
Specific function: NA
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA