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The map label for this gene is atpH

Identifier: 194335032

GI number: 194335032

Start: 2423732

End: 2424274

Strand: Reverse

Name: atpH

Synonym: Paes_2244

Alternate gene names: 194335032

Gene position: 2424274-2423732 (Counterclockwise)

Preceding gene: 194335033

Following gene: 194335031

Centisome position: 96.47

GC content: 48.43

Gene sequence:

>543_bases
ATGTCAAGTGCAATAGCTAGCCGGCGCTACGCCGCAGCCTTACTGGATGTCGCTGAAGATAGCGGTGTGGTTGAACAAGT
AGACACTGATCTTGAAATGATCAGTGCAACCATAGCCGACTCTCATGATCTTGTTGTCATGCTGAAAAGTCCGCTCATTA
AAGGCGATACTAAAGCAAAAGCTCTCAAGGCAGTCTTTCATGGCATGCTGAACGAGAAAACACTTTTGTTTATCGATCTT
ATCTGCAGAAAAAAGCGGGCTGATCATCTGCCTCAGATGGTTGAAGAGTATAAAGCGCTTCGAGACGAACGCTCCGGACT
GATCAATGTTGATGTCAACAGTGCCGTCAAGCTTGAAGATGAACAGGCACGTGAGCTTATCAACTCGCTGGCAACATACA
CCGGTAAAAAGGTTCGTGCTCGACTGGCACTTGACGAGAAACTGCTCGGTGGGGTTACCGTCAAGATTGGGGATACCATT
ATTGACGGCAGCGTACGCCATCAGCTCGACATGCTCAGAGTCGCACTTACCGCTGACGTCTAA

Upstream 100 bases:

>100_bases
AAAATTCTTATGGCCAACCTTGATGCCGACAAGCAGAAAGCTATTGTCAGCAGTATGATCCAGGATCTTTCAAAACATCG
TAACTGAAAACGCTCGGGAA

Downstream 100 bases:

>100_bases
GAGCTTTTCCGCAAAGGTCTGAAATAATAAAAAAGCCTGCTGAGCATTATCAGACAGGCTTTTTTTATTGTCGCCAAAGG
GAGATATCATTGCAGGATTA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSSAIASRRYAAALLDVAEDSGVVEQVDTDLEMISATIADSHDLVVMLKSPLIKGDTKAKALKAVFHGMLNEKTLLFIDL
ICRKKRADHLPQMVEEYKALRDERSGLINVDVNSAVKLEDEQARELINSLATYTGKKVRARLALDEKLLGGVTVKIGDTI
IDGSVRHQLDMLRVALTADV

Sequences:

>Translated_180_residues
MSSAIASRRYAAALLDVAEDSGVVEQVDTDLEMISATIADSHDLVVMLKSPLIKGDTKAKALKAVFHGMLNEKTLLFIDL
ICRKKRADHLPQMVEEYKALRDERSGLINVDVNSAVKLEDEQARELINSLATYTGKKVRARLALDEKLLGGVTVKIGDTI
IDGSVRHQLDMLRVALTADV
>Mature_179_residues
SSAIASRRYAAALLDVAEDSGVVEQVDTDLEMISATIADSHDLVVMLKSPLIKGDTKAKALKAVFHGMLNEKTLLFIDLI
CRKKRADHLPQMVEEYKALRDERSGLINVDVNSAVKLEDEQARELINSLATYTGKKVRARLALDEKLLGGVTVKIGDTII
DGSVRHQLDMLRVALTADV

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=166, Percent_Identity=28.3132530120482, Blast_Score=66, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71984710, Length=171, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71984717, Length=175, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_PROA2 (B4S6E3)

Other databases:

- EMBL:   CP001108
- RefSeq:   YP_002016892.1
- ProteinModelPortal:   B4S6E3
- SMR:   B4S6E3
- GeneID:   6459634
- GenomeReviews:   CP001108_GR
- KEGG:   paa:Paes_2244
- HOGENOM:   HBG668108
- OMA:   STVYDGS
- ProtClustDB:   PRK05758
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19742; Mature: 19611

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAIASRRYAAALLDVAEDSGVVEQVDTDLEMISATIADSHDLVVMLKSPLIKGDTKAK
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH
ALKAVFHGMLNEKTLLFIDLICRKKRADHLPQMVEEYKALRDERSGLINVDVNSAVKLED
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECH
EQARELINSLATYTGKKVRARLALDEKLLGGVTVKIGDTIIDGSVRHQLDMLRVALTADV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSAIASRRYAAALLDVAEDSGVVEQVDTDLEMISATIADSHDLVVMLKSPLIKGDTKAK
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH
ALKAVFHGMLNEKTLLFIDLICRKKRADHLPQMVEEYKALRDERSGLINVDVNSAVKLED
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECH
EQARELINSLATYTGKKVRARLALDEKLLGGVTVKIGDTIIDGSVRHQLDMLRVALTADV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA