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The map label for this gene is ykfC [H]

Identifier: 194334899

GI number: 194334899

Start: 2285752

End: 2286993

Strand: Reverse

Name: ykfC [H]

Synonym: Paes_2104

Alternate gene names: 194334899

Gene position: 2286993-2285752 (Counterclockwise)

Preceding gene: 194334900

Following gene: 194334898

Centisome position: 91.01

GC content: 49.6

Gene sequence:

>1242_bases
ATGACCAAGTCTTTCGAAATATCCAGGAAACTCGTATGGGAGGCCTATCAATGTGTCAAGGCAAATGAAGGGGCTGCCGG
GGTGGATCATGAGACGATAGAACAATTCGATCGTCATCTGAAAGACAATCTGTACAAGATCTGGAATCGCATGTCATCGG
GCAGCTATTTCCCGCCGCCAGTAAAAAGCGTGCCGATTCCAAAGAAGTCAGGTGGTGAGAGAGTGTTGGGGATTCCTACG
GTATCGGATCGAATCGCTCAGACGGTGGTCAAGCTCATGCTTGAGCCAATTCTTGATCCTTTGTTTCACAAAAATTCATA
TGGCTACCGTCCGGGGCGCTCAGCTCTGGATGCAGTAGCTATGGTGAGAAGAAGGTGTTGGGAATACGACTGGGTTGTGG
AGTTTGATATCAAGGGGCTTTTTGACAATATTGATCATGATTTGCTGATGCGTGCGCTCAGGAAACACTGCGAAACACCG
TGGATCCTGCTCTATGTTAAACGGTGGCTTAAAGCTCCGATGCAAACAGCAACAGGAGCCATAGTGGAGCGGTCAAGTGG
TACGCCGCAAGGCGGGGTCGTGAGTCCGCTGCTTGCCAATCTTTTCCTCCATTACGCTTTCGATATGTGGGTAACTCAGA
ATCTGCGAAGCGTGCGGTTTTGCCGTTACGCAGATGATGGAGTGATCCACTGTAAAAGCCGTGAGCAGGCGGAACTTGTA
CTTCATAAGATTCGCAAGCGCTTTGAGCAGTGCAAGCTTGAGCTGCACCCTGACAAAACGCGTATCGCCTATTGTCAGGA
TGTCAATCGGCAAGAAGCATACCCGAATGTGCAGTTTACCTTTCTTGGCTATACCTTCAGACCACGAAGATCGGTGGACA
AGTATGGCCGGTTGTATGTGAACTTCAGTCCTGCGGTAAGCCGTGATGCCCTTAAGGCAATGCGGCAAACCATAAGGGGC
TGGCATATCCAGCTACGGTGTGATCGGAATCTCCAGGAATTAGCTGCGAGATTCAATGCGGTACTCCGTGGTTGGCACTG
CTACTATGGTAAATTCCATGGGTCGGCAATGTCTGTCATATGGAGGCACATGAACATGTACCTGGCACGTTGGTTGATGC
GAAAGTACAAGCATTTAGCTGGGCACAAGACCCGAGCAACAAAAGCACTGGGTAAACTGGCTCAAAGCTTTCCGAACGAA
TTCGTTCATTGGCAACTTGGATATGCACCAAAGGCTGGATGA

Upstream 100 bases:

>100_bases
GTAGTAGTGATGAAGCTGCTGTAATGGTGGTGGAGCGAAGGGACGGTATCATTCAGGTCATACCAGAAGTCAACCGTGAG
AGCGGGAGGAGCTGCTGATC

Downstream 100 bases:

>100_bases
TGGGAGCTGTATGAGCGGAGACGTTCACGTACAGTTCTGAGAGGGGCTGGGGGTGAAATTCCCTTGGTCTACTCACCCGT
ATGTGCCCATGGCTCAAGGC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MTKSFEISRKLVWEAYQCVKANEGAAGVDHETIEQFDRHLKDNLYKIWNRMSSGSYFPPPVKSVPIPKKSGGERVLGIPT
VSDRIAQTVVKLMLEPILDPLFHKNSYGYRPGRSALDAVAMVRRRCWEYDWVVEFDIKGLFDNIDHDLLMRALRKHCETP
WILLYVKRWLKAPMQTATGAIVERSSGTPQGGVVSPLLANLFLHYAFDMWVTQNLRSVRFCRYADDGVIHCKSREQAELV
LHKIRKRFEQCKLELHPDKTRIAYCQDVNRQEAYPNVQFTFLGYTFRPRRSVDKYGRLYVNFSPAVSRDALKAMRQTIRG
WHIQLRCDRNLQELAARFNAVLRGWHCYYGKFHGSAMSVIWRHMNMYLARWLMRKYKHLAGHKTRATKALGKLAQSFPNE
FVHWQLGYAPKAG

Sequences:

>Translated_413_residues
MTKSFEISRKLVWEAYQCVKANEGAAGVDHETIEQFDRHLKDNLYKIWNRMSSGSYFPPPVKSVPIPKKSGGERVLGIPT
VSDRIAQTVVKLMLEPILDPLFHKNSYGYRPGRSALDAVAMVRRRCWEYDWVVEFDIKGLFDNIDHDLLMRALRKHCETP
WILLYVKRWLKAPMQTATGAIVERSSGTPQGGVVSPLLANLFLHYAFDMWVTQNLRSVRFCRYADDGVIHCKSREQAELV
LHKIRKRFEQCKLELHPDKTRIAYCQDVNRQEAYPNVQFTFLGYTFRPRRSVDKYGRLYVNFSPAVSRDALKAMRQTIRG
WHIQLRCDRNLQELAARFNAVLRGWHCYYGKFHGSAMSVIWRHMNMYLARWLMRKYKHLAGHKTRATKALGKLAQSFPNE
FVHWQLGYAPKAG
>Mature_412_residues
TKSFEISRKLVWEAYQCVKANEGAAGVDHETIEQFDRHLKDNLYKIWNRMSSGSYFPPPVKSVPIPKKSGGERVLGIPTV
SDRIAQTVVKLMLEPILDPLFHKNSYGYRPGRSALDAVAMVRRRCWEYDWVVEFDIKGLFDNIDHDLLMRALRKHCETPW
ILLYVKRWLKAPMQTATGAIVERSSGTPQGGVVSPLLANLFLHYAFDMWVTQNLRSVRFCRYADDGVIHCKSREQAELVL
HKIRKRFEQCKLELHPDKTRIAYCQDVNRQEAYPNVQFTFLGYTFRPRRSVDKYGRLYVNFSPAVSRDALKAMRQTIRGW
HIQLRCDRNLQELAARFNAVLRGWHCYYGKFHGSAMSVIWRHMNMYLARWLMRKYKHLAGHKTRATKALGKLAQSFPNEF
VHWQLGYAPKAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=201, Percent_Identity=29.3532338308458, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6226521, Length=196, Percent_Identity=28.0612244897959, Blast_Score=95, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 48158; Mature: 48027

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSFEISRKLVWEAYQCVKANEGAAGVDHETIEQFDRHLKDNLYKIWNRMSSGSYFPPP
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VKSVPIPKKSGGERVLGIPTVSDRIAQTVVKLMLEPILDPLFHKNSYGYRPGRSALDAVA
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
MVRRRCWEYDWVVEFDIKGLFDNIDHDLLMRALRKHCETPWILLYVKRWLKAPMQTATGA
HHHHHHCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHH
IVERSSGTPQGGVVSPLLANLFLHYAFDMWVTQNLRSVRFCRYADDGVIHCKSREQAELV
HEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCHHHHHH
LHKIRKRFEQCKLELHPDKTRIAYCQDVNRQEAYPNVQFTFLGYTFRPRRSVDKYGRLYV
HHHHHHHHHHCCEEECCCCHHHHHHHCCCHHHCCCCEEEEEEEEEECCCCCHHHHCEEEE
NFSPAVSRDALKAMRQTIRGWHIQLRCDRNLQELAARFNAVLRGWHCYYGKFHGSAMSVI
EECCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
WRHMNMYLARWLMRKYKHLAGHKTRATKALGKLAQSFPNEFVHWQLGYAPKAG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHEEEEECCCCCCC
>Mature Secondary Structure 
TKSFEISRKLVWEAYQCVKANEGAAGVDHETIEQFDRHLKDNLYKIWNRMSSGSYFPPP
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VKSVPIPKKSGGERVLGIPTVSDRIAQTVVKLMLEPILDPLFHKNSYGYRPGRSALDAVA
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
MVRRRCWEYDWVVEFDIKGLFDNIDHDLLMRALRKHCETPWILLYVKRWLKAPMQTATGA
HHHHHHCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHH
IVERSSGTPQGGVVSPLLANLFLHYAFDMWVTQNLRSVRFCRYADDGVIHCKSREQAELV
HEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCHHHHHH
LHKIRKRFEQCKLELHPDKTRIAYCQDVNRQEAYPNVQFTFLGYTFRPRRSVDKYGRLYV
HHHHHHHHHHCCEEECCCCHHHHHHHCCCHHHCCCCEEEEEEEEEECCCCCHHHHCEEEE
NFSPAVSRDALKAMRQTIRGWHIQLRCDRNLQELAARFNAVLRGWHCYYGKFHGSAMSVI
EECCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
WRHMNMYLARWLMRKYKHLAGHKTRATKALGKLAQSFPNEFVHWQLGYAPKAG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]