Click here to switch to the map view.

The map label for this gene is csmC [H]

Identifier: 194334760

GI number: 194334760

Start: 2143260

End: 2143679

Strand: Reverse

Name: csmC [H]

Synonym: Paes_1961

Alternate gene names: 194334760

Gene position: 2143679-2143260 (Counterclockwise)

Preceding gene: 194334761

Following gene: 194334759

Centisome position: 85.31

GC content: 49.76

Gene sequence:

>420_bases
ATGTCTGAATCTTATCAGAAACTCCGTAAGGATTTTAAAGACCTCGAATTGACCGATCGTGTGGCTTTTCTTGCAGAGGG
CGCACTTCTGACCGGTCAGAGCGCAGTTGTCGGTACTCTTGAAATCGCTGGCAGTGTTGTCGAAACTGTTGCCGGTACTG
TTGGTTCGCTGGTCGATGCGACCGGTGTAGGCAGACTTCTTGGTAACACTGGTGGTGTTGTCGGAGAGACACTTGACAGA
GTAGCGATCACTGTTAAGGATGTTTCCCGTTCGGCTGGCGATTTGTACAGCGATGCAGTCAAAAACGTTGAGAACGTGAC
TGATAACGCTGCCAAAGCAATCGGTGATGCCGGTGTTTCAGCTTCTGAAGCTGTGAAAGGCGTGGCCAGCACATTTCAGA
AATCAGTTGGCACGAAGTAA

Upstream 100 bases:

>100_bases
GACATGAAGGCGAATTTTGTTACTTTCATAGAACGTTTTATTGTCATTACTAAACAACGTAAACTGGCTCTCCGGGAGCC
TTAATATCAAGGAGAAAAAA

Downstream 100 bases:

>100_bases
AGGCTTGATGCCCCGAGGGGGCCAAGGTTGATTTTGTTTGCGTTTTTTTGTTATTTAACGTAAATTAATTCAAAGTTTCT
ATTTCCTATATCCTGGTAAA

Product: chlorosome envelope protein C

Products: NA

Alternate protein names: 14 kDa chlorosome protein [H]

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSESYQKLRKDFKDLELTDRVAFLAEGALLTGQSAVVGTLEIAGSVVETVAGTVGSLVDATGVGRLLGNTGGVVGETLDR
VAITVKDVSRSAGDLYSDAVKNVENVTDNAAKAIGDAGVSASEAVKGVASTFQKSVGTK

Sequences:

>Translated_139_residues
MSESYQKLRKDFKDLELTDRVAFLAEGALLTGQSAVVGTLEIAGSVVETVAGTVGSLVDATGVGRLLGNTGGVVGETLDR
VAITVKDVSRSAGDLYSDAVKNVENVTDNAAKAIGDAGVSASEAVKGVASTFQKSVGTK
>Mature_138_residues
SESYQKLRKDFKDLELTDRVAFLAEGALLTGQSAVVGTLEIAGSVVETVAGTVGSLVDATGVGRLLGNTGGVVGETLDRV
AITVKDVSRSAGDLYSDAVKNVENVTDNAAKAIGDAGVSASEAVKGVASTFQKSVGTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Chlorosome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020995 [H]

Pfam domain/function: PF11098 Chlorosome_CsmC [H]

EC number: NA

Molecular weight: Translated: 14092; Mature: 13961

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESYQKLRKDFKDLELTDRVAFLAEGALLTGQSAVVGTLEIAGSVVETVAGTVGSLVDA
CCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TGVGRLLGNTGGVVGETLDRVAITVKDVSRSAGDLYSDAVKNVENVTDNAAKAIGDAGVS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ASEAVKGVASTFQKSVGTK
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SESYQKLRKDFKDLELTDRVAFLAEGALLTGQSAVVGTLEIAGSVVETVAGTVGSLVDA
CHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TGVGRLLGNTGGVVGETLDRVAITVKDVSRSAGDLYSDAVKNVENVTDNAAKAIGDAGVS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ASEAVKGVASTFQKSVGTK
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA