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The map label for this gene is ycbB [H]

Identifier: 194334694

GI number: 194334694

Start: 2072644

End: 2074341

Strand: Reverse

Name: ycbB [H]

Synonym: Paes_1895

Alternate gene names: 194334694

Gene position: 2074341-2072644 (Counterclockwise)

Preceding gene: 194334695

Following gene: 194334687

Centisome position: 82.55

GC content: 51.65

Gene sequence:

>1698_bases
ATGGGTGCCATTATTCTTGCCTTTGTTTTTGCAGCGGCACTTGCCAGCCCTGTTGCTGGTTATACTGCTGAATCGGGCAG
TGCAGCCGCTCGCAATGCAACTGCTTCGAGCTCTTTTGATAGTGAAGTAGGAGAAAATATCCGGTGTCATATTGAGCAGC
TGCAGCAGGATATCGCCCTCCAGGTCGGTAGTGAGAAAGTTGCTTTCAACGAGTTGCTTTCCATTTTTTATCAGGAGCGG
CAGTTTGCTCCCGTCTGGACGAAACGCAAGCAGATTAATGAACTGATTCGTGCCATAGAGGGGGCTGAAGCTGACGGGCT
GAATCCTGAAGACTATCATCTTGCTGAAATAAAACGTTTTACTTCTGATCCGCCTTCAACCCCATTTCTGCAGGCTCGCT
ACGATCTTCTGCTCAGTGACGCGTTGTTCAAGCTCTCCTGGCATCTGATGAATGGTAAGGTTGATCCTGAAAAACTTGAT
TCCAACTGGAATATCTCCAATGGCTTCAACGGCGATGGCCTTCTGTGGCGCCTGCAGAACGCCATTGAGGGGGATTCAAT
TGCCGCGGCACTTGAGCAGATCCGTCCGGTCCATCCGAAGTACCTGAGCCTCAAAAAGGCTCTTGCCAGGTATCGGGACT
ATGAGTCCGACGGAGGGTGGCCTTCGATCCCGGCCGGCCCGTCGATAAGGCATGAAGGTGATAGAGATGAAAGAATTCCC
GTTCTTAGAAGGCGATTGGAGATTACCGGCGAGGCGGTTTCCCTCGCTACCGTCGATACATCATTTGCTGATTCTGCAAT
GGTCTACTCGAAAGAGCTCGTTGACGCCGTCATGGTTTTTCAGCGGCGTAACGGTCTCGAGGTTGACGGAGTTGTCGGCC
CCAGAACGCTTGAGGCGCTCAACATAAGCGCTTCGCAACGGGTCGAGCAGATCAGGATCAATCTTGAACGTTATCGCTGG
TTTATCACCAAGCTCGAGCCGACCTTCATTATGGTCAATATTGCAGGGTTTACCATTCAGTATGTCGAAAACGGAGCGTT
AACCTGGTCGTCGCGAGTGATCGTCGGTGAACCTTTCTGGAAGACGCCTGTTTTCAGGGCCGACATGCGCTACCTGATCT
TCAATCCTTCATGGAACGTGCCCCCCGGAATTCTTAAAAAGGAAGCCCTCCCATCAATGAAGAGCGATGGGGGTTATCTG
AGCCGTAACGGCTTGCAGGTGATTGATCGTAACGGCAATGTCGTCGATCCTTCATCGATCGACTGGGCCGGTTACAGTGC
CGGTTCGTTTCCCTATCGGTTACGCCAGCCTCCCGGTGTCCGCAATGCGCTTGGCAGAGTGAAGTTCATGTTTCCCAACC
GCCATTTCGTCTATCTGCACGATACGCCAGGCAAGCATCTTTTCGACAGAAGCGAGCGGGCTTTCAGCCACGGATGCATT
CGTCTCGAAAATCCCCTGGATCTTGCAGGCGTTCTCCTTGGGTGGAGTCCTGAGCAGATTGAGAGTGCGCTTTCATCGGG
TAAAACCAGAACGGTCAATCTTTCCAGACCGATTCCTGTTTTTCTGCTCTATCTGACAGCCGTTGCCGAAGGAGATGAAG
TGCTCTTCCGCAACGATGTCTATAATCGCGATGCGGCCGTTCTGAATGCGCTTGATCGCTCTTTTCCCTATAAGACTATA
GAAAGCTGTACATTCTGA

Upstream 100 bases:

>100_bases
ACGACAGCTACGTCTATGATTCCCGTCTTGTGAAGCCTGATTTTGCGATGCAGTCCGGTGGCGGAGCATCTCGTCGTTCA
TAACCAGAAGACGCATATCT

Downstream 100 bases:

>100_bases
TCATGCAAAACCCCGCTTTCGACGGGGTTTTGGTATCGTTGGTCAGGGCGTGTAGTTGAGGTTTGGCGCCAGCCATTTTT
CAACCTCCGACCTCGTCATT

Product: peptidoglycan-binding domain 1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 564

Protein sequence:

>565_residues
MGAIILAFVFAAALASPVAGYTAESGSAAARNATASSSFDSEVGENIRCHIEQLQQDIALQVGSEKVAFNELLSIFYQER
QFAPVWTKRKQINELIRAIEGAEADGLNPEDYHLAEIKRFTSDPPSTPFLQARYDLLLSDALFKLSWHLMNGKVDPEKLD
SNWNISNGFNGDGLLWRLQNAIEGDSIAAALEQIRPVHPKYLSLKKALARYRDYESDGGWPSIPAGPSIRHEGDRDERIP
VLRRRLEITGEAVSLATVDTSFADSAMVYSKELVDAVMVFQRRNGLEVDGVVGPRTLEALNISASQRVEQIRINLERYRW
FITKLEPTFIMVNIAGFTIQYVENGALTWSSRVIVGEPFWKTPVFRADMRYLIFNPSWNVPPGILKKEALPSMKSDGGYL
SRNGLQVIDRNGNVVDPSSIDWAGYSAGSFPYRLRQPPGVRNALGRVKFMFPNRHFVYLHDTPGKHLFDRSERAFSHGCI
RLENPLDLAGVLLGWSPEQIESALSSGKTRTVNLSRPIPVFLLYLTAVAEGDEVLFRNDVYNRDAAVLNALDRSFPYKTI
ESCTF

Sequences:

>Translated_565_residues
MGAIILAFVFAAALASPVAGYTAESGSAAARNATASSSFDSEVGENIRCHIEQLQQDIALQVGSEKVAFNELLSIFYQER
QFAPVWTKRKQINELIRAIEGAEADGLNPEDYHLAEIKRFTSDPPSTPFLQARYDLLLSDALFKLSWHLMNGKVDPEKLD
SNWNISNGFNGDGLLWRLQNAIEGDSIAAALEQIRPVHPKYLSLKKALARYRDYESDGGWPSIPAGPSIRHEGDRDERIP
VLRRRLEITGEAVSLATVDTSFADSAMVYSKELVDAVMVFQRRNGLEVDGVVGPRTLEALNISASQRVEQIRINLERYRW
FITKLEPTFIMVNIAGFTIQYVENGALTWSSRVIVGEPFWKTPVFRADMRYLIFNPSWNVPPGILKKEALPSMKSDGGYL
SRNGLQVIDRNGNVVDPSSIDWAGYSAGSFPYRLRQPPGVRNALGRVKFMFPNRHFVYLHDTPGKHLFDRSERAFSHGCI
RLENPLDLAGVLLGWSPEQIESALSSGKTRTVNLSRPIPVFLLYLTAVAEGDEVLFRNDVYNRDAAVLNALDRSFPYKTI
ESCTF
>Mature_564_residues
GAIILAFVFAAALASPVAGYTAESGSAAARNATASSSFDSEVGENIRCHIEQLQQDIALQVGSEKVAFNELLSIFYQERQ
FAPVWTKRKQINELIRAIEGAEADGLNPEDYHLAEIKRFTSDPPSTPFLQARYDLLLSDALFKLSWHLMNGKVDPEKLDS
NWNISNGFNGDGLLWRLQNAIEGDSIAAALEQIRPVHPKYLSLKKALARYRDYESDGGWPSIPAGPSIRHEGDRDERIPV
LRRRLEITGEAVSLATVDTSFADSAMVYSKELVDAVMVFQRRNGLEVDGVVGPRTLEALNISASQRVEQIRINLERYRWF
ITKLEPTFIMVNIAGFTIQYVENGALTWSSRVIVGEPFWKTPVFRADMRYLIFNPSWNVPPGILKKEALPSMKSDGGYLS
RNGLQVIDRNGNVVDPSSIDWAGYSAGSFPYRLRQPPGVRNALGRVKFMFPNRHFVYLHDTPGKHLFDRSERAFSHGCIR
LENPLDLAGVLLGWSPEQIESALSSGKTRTVNLSRPIPVFLLYLTAVAEGDEVLFRNDVYNRDAAVLNALDRSFPYKTIE
SCTF

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=545, Percent_Identity=32.1100917431193, Blast_Score=254, Evalue=7e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 63223; Mature: 63092

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAIILAFVFAAALASPVAGYTAESGSAAARNATASSSFDSEVGENIRCHIEQLQQDIAL
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH
QVGSEKVAFNELLSIFYQERQFAPVWTKRKQINELIRAIEGAEADGLNPEDYHLAEIKRF
HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TSDPPSTPFLQARYDLLLSDALFKLSWHLMNGKVDPEKLDSNWNISNGFNGDGLLWRLQN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHCCCCCCCCCCCCCCCCEEEEHH
AIEGDSIAAALEQIRPVHPKYLSLKKALARYRDYESDGGWPSIPAGPSIRHEGDRDERIP
HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
VLRRRLEITGEAVSLATVDTSFADSAMVYSKELVDAVMVFQRRNGLEVDGVVGPRTLEAL
HHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHEE
NISASQRVEQIRINLERYRWFITKLEPTFIMVNIAGFTIQYVENGALTWSSRVIVGEPFW
CCCHHHHHHHHHHHHHHHEEEEEEECCEEEEEEECCEEEEEEECCCEEEECEEEECCCCC
KTPVFRADMRYLIFNPSWNVPPGILKKEALPSMKSDGGYLSRNGLQVIDRNGNVVDPSSI
CCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEECCCCEEEECCCCEECCCCC
DWAGYSAGSFPYRLRQPPGVRNALGRVKFMFPNRHFVYLHDTPGKHLFDRSERAFSHGCI
CCCCCCCCCCCEECCCCCCHHHHHCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCE
RLENPLDLAGVLLGWSPEQIESALSSGKTRTVNLSRPIPVFLLYLTAVAEGDEVLFRNDV
EECCCCCHHHHEECCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCC
YNRDAAVLNALDRSFPYKTIESCTF
CCCHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
GAIILAFVFAAALASPVAGYTAESGSAAARNATASSSFDSEVGENIRCHIEQLQQDIAL
CHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH
QVGSEKVAFNELLSIFYQERQFAPVWTKRKQINELIRAIEGAEADGLNPEDYHLAEIKRF
HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TSDPPSTPFLQARYDLLLSDALFKLSWHLMNGKVDPEKLDSNWNISNGFNGDGLLWRLQN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHCCCCCCCCCCCCCCCCEEEEHH
AIEGDSIAAALEQIRPVHPKYLSLKKALARYRDYESDGGWPSIPAGPSIRHEGDRDERIP
HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
VLRRRLEITGEAVSLATVDTSFADSAMVYSKELVDAVMVFQRRNGLEVDGVVGPRTLEAL
HHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHEE
NISASQRVEQIRINLERYRWFITKLEPTFIMVNIAGFTIQYVENGALTWSSRVIVGEPFW
CCCHHHHHHHHHHHHHHHEEEEEEECCEEEEEEECCEEEEEEECCCEEEECEEEECCCCC
KTPVFRADMRYLIFNPSWNVPPGILKKEALPSMKSDGGYLSRNGLQVIDRNGNVVDPSSI
CCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEECCCCEEEECCCCEECCCCC
DWAGYSAGSFPYRLRQPPGVRNALGRVKFMFPNRHFVYLHDTPGKHLFDRSERAFSHGCI
CCCCCCCCCCCEECCCCCCHHHHHCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCE
RLENPLDLAGVLLGWSPEQIESALSSGKTRTVNLSRPIPVFLLYLTAVAEGDEVLFRNDV
EECCCCCHHHHEECCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCC
YNRDAAVLNALDRSFPYKTIESCTF
CCCHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]