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The map label for this gene is dapB [H]

Identifier: 194334685

GI number: 194334685

Start: 2060490

End: 2061236

Strand: Reverse

Name: dapB [H]

Synonym: Paes_1886

Alternate gene names: 194334685

Gene position: 2061236-2060490 (Counterclockwise)

Preceding gene: 194334686

Following gene: 194334684

Centisome position: 82.03

GC content: 51.81

Gene sequence:

>747_bases
ATGAGATATACGCTTGTTGGAAACGGCAGAATGGGGCAGCAGGTGCAGTCAGTTATCGAAGCATCTCCTGAGCATGAGGT
CCATGCCGTGCTTGATGTCGATGCAGCCATTACGGCGGGCTCTTTTGCCGGAAGTGATGTTATTATCGATTTTACCGTCA
GGGACGCGTTTCTTGCAAACCTTCCCGCTATGATTGACTCCGGGGTTCCTGTCGTTGTCGGTACGACGGGATGGGATGAT
CAGGTTGAACGAATCAGCGCTCAGGCCAGAGAAGCGGGGGCCTCCCTGATGTATTCTGCAAACTTCTCTCTCGGCGTCAA
TATTTTTCTGAGAACAGTGCGGGAAGCGGCTAAAATGATCGGCTCTTTCGATCAGTTCGATATCGCTTTCAGCGAGCAGC
ACCATACCGCAAAGGCGGATTTTCCAAGCGGAACGGCGCTCTGTGCGGCACAGATGATTCTCGACGCAAATCCCCGCAAG
AAAACAGTGCTTTCTGCCCTGTCTGAAGACCGCAAAATTCGACCTGATGAACTGCAGGTTGCTTCCATCAGGCTTGGTTC
GGTGTTCGGACAGCATGCCGCTCATATCAATTCTGATTTTGACGATATTGTCATCTCCCATACTGCCCGAAGTCGTCAGG
GTTTTGCCAGCGGAGCTGTCGAGGCCGGCAGATGGCTTGCGACAAAGCATCGCAGCACTCCGGGGTTTTATACCATGGAT
AATTTTCTTGATGAAGTTCTCGGATAG

Upstream 100 bases:

>100_bases
TGATCTTGAACGGATTCTTGAACTGCTGGGATAAGTGATACGCTGTTGAACCTGTCATGACGATGTGGATATTATTGAAT
ATTGAAACCATAGTGATCAT

Downstream 100 bases:

>100_bases
GAGCATATGCAGGACAATCTCATGAAAGAACAGCTCCCCCACCAGCAGAAAGAGAAATTACGGGCGCTTGCAAGAGGCGC
CCTTCTGATCGTCCTCACGA

Product: Dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MRYTLVGNGRMGQQVQSVIEASPEHEVHAVLDVDAAITAGSFAGSDVIIDFTVRDAFLANLPAMIDSGVPVVVGTTGWDD
QVERISAQAREAGASLMYSANFSLGVNIFLRTVREAAKMIGSFDQFDIAFSEQHHTAKADFPSGTALCAAQMILDANPRK
KTVLSALSEDRKIRPDELQVASIRLGSVFGQHAAHINSDFDDIVISHTARSRQGFASGAVEAGRWLATKHRSTPGFYTMD
NFLDEVLG

Sequences:

>Translated_248_residues
MRYTLVGNGRMGQQVQSVIEASPEHEVHAVLDVDAAITAGSFAGSDVIIDFTVRDAFLANLPAMIDSGVPVVVGTTGWDD
QVERISAQAREAGASLMYSANFSLGVNIFLRTVREAAKMIGSFDQFDIAFSEQHHTAKADFPSGTALCAAQMILDANPRK
KTVLSALSEDRKIRPDELQVASIRLGSVFGQHAAHINSDFDDIVISHTARSRQGFASGAVEAGRWLATKHRSTPGFYTMD
NFLDEVLG
>Mature_248_residues
MRYTLVGNGRMGQQVQSVIEASPEHEVHAVLDVDAAITAGSFAGSDVIIDFTVRDAFLANLPAMIDSGVPVVVGTTGWDD
QVERISAQAREAGASLMYSANFSLGVNIFLRTVREAAKMIGSFDQFDIAFSEQHHTAKADFPSGTALCAAQMILDANPRK
KTVLSALSEDRKIRPDELQVASIRLGSVFGQHAAHINSDFDDIVISHTARSRQGFASGAVEAGRWLATKHRSTPGFYTMD
NFLDEVLG

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=270, Percent_Identity=32.2222222222222, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 26757; Mature: 26757

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYTLVGNGRMGQQVQSVIEASPEHEVHAVLDVDAAITAGSFAGSDVIIDFTVRDAFLAN
CEEEEEECCCCHHHHHHHHHCCCCCCEEEEEECCHHHCCCCCCCCCEEEEEEHHHHHHHH
LPAMIDSGVPVVVGTTGWDDQVERISAQAREAGASLMYSANFSLGVNIFLRTVREAAKMI
CHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHH
GSFDQFDIAFSEQHHTAKADFPSGTALCAAQMILDANPRKKTVLSALSEDRKIRPDELQV
CCCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEE
ASIRLGSVFGQHAAHINSDFDDIVISHTARSRQGFASGAVEAGRWLATKHRSTPGFYTMD
EEEHHHHHHHHHHHHCCCCHHHHEEECCHHHHCCCHHCHHHHCHHHHHHCCCCCCCCHHH
NFLDEVLG
HHHHHHCC
>Mature Secondary Structure
MRYTLVGNGRMGQQVQSVIEASPEHEVHAVLDVDAAITAGSFAGSDVIIDFTVRDAFLAN
CEEEEEECCCCHHHHHHHHHCCCCCCEEEEEECCHHHCCCCCCCCCEEEEEEHHHHHHHH
LPAMIDSGVPVVVGTTGWDDQVERISAQAREAGASLMYSANFSLGVNIFLRTVREAAKMI
CHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHH
GSFDQFDIAFSEQHHTAKADFPSGTALCAAQMILDANPRKKTVLSALSEDRKIRPDELQV
CCCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEE
ASIRLGSVFGQHAAHINSDFDDIVISHTARSRQGFASGAVEAGRWLATKHRSTPGFYTMD
EEEHHHHHHHHHHHHCCCCHHHHEEECCHHHHCCCHHCHHHHCHHHHHHCCCCCCCCHHH
NFLDEVLG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA