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The map label for this gene is trbB [H]

Identifier: 194334525

GI number: 194334525

Start: 1877985

End: 1878974

Strand: Reverse

Name: trbB [H]

Synonym: Paes_1720

Alternate gene names: 194334525

Gene position: 1878974-1877985 (Counterclockwise)

Preceding gene: 194334526

Following gene: 194334524

Centisome position: 74.77

GC content: 52.93

Gene sequence:

>990_bases
ATGAATGATATTTCAATAAGCCGTCGAATGGCTTCATTGCGTAGTGCTGTATTGCCTATTGTTCATTTGTTGGAGCAGGA
GCGTATTGTTGAGATTATGCTGAACCCTGATGGCTGTATCTGGGTTGAGGAGGCTGGAAAGGGTATGTACCGGACGGATA
TCAGAATGAGTTCGGACGATGCTGAACGGATGATACGCCTTGCTGCTGCTGCTGTTCATACCGAGGTTAACGAGCGTCAC
CCATCCCTGGCTGCGACGCTGCCGGGCTGGGGAGCGCGCCTTCAGGCTTCGGTTCCTCCTATTGTTTCTTCCCCTGTGTT
TGCTTTGCGAAAACCTCCTGTTGTCGTGTTTAGGCTTGATGATTATGTCGATGCGGGGATTATGACTGCTGAACAAGCGG
CTTACCTGGAGGGTTGTGTGTATGCCAGACGCAATGTTCTTGTCGGTGGCGGAACGGGTTCGGGGAAGACGACCCTGACC
AACGCTCTTCTTGCTGTTGTTGCCGCTACCGGTGATCGGGTGTATATCGTTGAGGATAATCCTGAGCTGCAGTGCAGGGC
TGAGAATATGGTGAATGTGCTGGTTCATCCTCCTTTTTATACGCATCAGCATGCGGTTATGGATGCGATGCGTTTCAGGC
CTGACAGGATCATTGTGGGAGAGGTCCGCGATGGTGCTGCGCTCGATATGCTGAAGGCCTGGAATACCGGGCATCCGGGT
GGAATTGCTACGATTCATGCGAATCATACGTCAGCCATGCTTGACCGGATGGCTCAGCTCTGTCAGGAAGTTATGCCGTC
GGCTCCACGGTATCTGATTGCAGAAGCTGTGGATGTGTGTGTGCATATCAGTCGGAACGATCGTTCTTCTGCAGGTCGGA
TTGTGACGGGTATTGCTGAGGTGAAGGGCCTCGGCGATGGTGGCGAGTGGCTTCTGGAGCAGCGGTTTGGTCAAGGTATA
CCGGAACTTTGCTGTATAGGCGGGCCTTGA

Upstream 100 bases:

>100_bases
TGCTTGTTTTTCCTTTTGTAAAACGTTATATATCTGCATAGGTATTCAGTTATGGATGCCTCTCTGAAGAAATCCCCCAA
TTTCTCTACTGTAGTGTTGT

Downstream 100 bases:

>100_bases
TGTTTCAGCTGCTGGTTTGCGTGATATGACCCCCAAGTCAAAACAATAATAACACAATACACAAGTAAAGGAGATGTTCA
TGAAGCGGACATTGTTGGCG

Product: P-type conjugative transfer ATPase TrbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNDISISRRMASLRSAVLPIVHLLEQERIVEIMLNPDGCIWVEEAGKGMYRTDIRMSSDDAERMIRLAAAAVHTEVNERH
PSLAATLPGWGARLQASVPPIVSSPVFALRKPPVVVFRLDDYVDAGIMTAEQAAYLEGCVYARRNVLVGGGTGSGKTTLT
NALLAVVAATGDRVYIVEDNPELQCRAENMVNVLVHPPFYTHQHAVMDAMRFRPDRIIVGEVRDGAALDMLKAWNTGHPG
GIATIHANHTSAMLDRMAQLCQEVMPSAPRYLIAEAVDVCVHISRNDRSSAGRIVTGIAEVKGLGDGGEWLLEQRFGQGI
PELCCIGGP

Sequences:

>Translated_329_residues
MNDISISRRMASLRSAVLPIVHLLEQERIVEIMLNPDGCIWVEEAGKGMYRTDIRMSSDDAERMIRLAAAAVHTEVNERH
PSLAATLPGWGARLQASVPPIVSSPVFALRKPPVVVFRLDDYVDAGIMTAEQAAYLEGCVYARRNVLVGGGTGSGKTTLT
NALLAVVAATGDRVYIVEDNPELQCRAENMVNVLVHPPFYTHQHAVMDAMRFRPDRIIVGEVRDGAALDMLKAWNTGHPG
GIATIHANHTSAMLDRMAQLCQEVMPSAPRYLIAEAVDVCVHISRNDRSSAGRIVTGIAEVKGLGDGGEWLLEQRFGQGI
PELCCIGGP
>Mature_329_residues
MNDISISRRMASLRSAVLPIVHLLEQERIVEIMLNPDGCIWVEEAGKGMYRTDIRMSSDDAERMIRLAAAAVHTEVNERH
PSLAATLPGWGARLQASVPPIVSSPVFALRKPPVVVFRLDDYVDAGIMTAEQAAYLEGCVYARRNVLVGGGTGSGKTTLT
NALLAVVAATGDRVYIVEDNPELQCRAENMVNVLVHPPFYTHQHAVMDAMRFRPDRIIVGEVRDGAALDMLKAWNTGHPG
GIATIHANHTSAMLDRMAQLCQEVMPSAPRYLIAEAVDVCVHISRNDRSSAGRIVTGIAEVKGLGDGGEWLLEQRFGQGI
PELCCIGGP

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 35724; Mature: 35724

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00227 TUBULIN ; PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDISISRRMASLRSAVLPIVHLLEQERIVEIMLNPDGCIWVEEAGKGMYRTDIRMSSDD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCEEEEECEECCHH
AERMIRLAAAAVHTEVNERHPSLAATLPGWGARLQASVPPIVSSPVFALRKPPVVVFRLD
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCHHHHCCCCEEEEEEC
DYVDAGIMTAEQAAYLEGCVYARRNVLVGGGTGSGKTTLTNALLAVVAATGDRVYIVEDN
CCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHEECCCEEEEEECC
PELQCRAENMVNVLVHPPFYTHQHAVMDAMRFRPDRIIVGEVRDGAALDMLKAWNTGHPG
CCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCC
GIATIHANHTSAMLDRMAQLCQEVMPSAPRYLIAEAVDVCVHISRNDRSSAGRIVTGIAE
CEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCEEEEHHH
VKGLGDGGEWLLEQRFGQGIPELCCIGGP
HCCCCCCHHHHHHHHHCCCCCHHEECCCC
>Mature Secondary Structure
MNDISISRRMASLRSAVLPIVHLLEQERIVEIMLNPDGCIWVEEAGKGMYRTDIRMSSDD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCEEEEECEECCHH
AERMIRLAAAAVHTEVNERHPSLAATLPGWGARLQASVPPIVSSPVFALRKPPVVVFRLD
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCHHHHCCCCEEEEEEC
DYVDAGIMTAEQAAYLEGCVYARRNVLVGGGTGSGKTTLTNALLAVVAATGDRVYIVEDN
CCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHEECCCEEEEEECC
PELQCRAENMVNVLVHPPFYTHQHAVMDAMRFRPDRIIVGEVRDGAALDMLKAWNTGHPG
CCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCC
GIATIHANHTSAMLDRMAQLCQEVMPSAPRYLIAEAVDVCVHISRNDRSSAGRIVTGIAE
CEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCEEEEHHH
VKGLGDGGEWLLEQRFGQGIPELCCIGGP
HCCCCCCHHHHHHHHHCCCCCHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]