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The map label for this gene is trbF [H]

Identifier: 194334518

GI number: 194334518

Start: 1871956

End: 1872654

Strand: Reverse

Name: trbF [H]

Synonym: Paes_1713

Alternate gene names: 194334518

Gene position: 1872654-1871956 (Counterclockwise)

Preceding gene: 194334519

Following gene: 194334517

Centisome position: 74.52

GC content: 51.07

Gene sequence:

>699_bases
ATGAGTAAAGAAGCTTCGGGCCGGAAGTGGTCTCCTGAGGGCGGGCTTGATACGCCTTATAAGCGAGCCAGACAAGAGTG
GGATAACCGGATGGGCAGTGCGGTTATCCAGGCTAAAAACTGGCGACTTGCAACCTTTGCGACGTTGCTGTTGGTAGCGT
TTCCCTCTCTTCTGGGGTTGGTGTATCTGGGGGCTCAACCGAAAGCTGTTCCTCATATTGTTGAGGTTTCTGCTGATGGC
AAGGCTGTTTATCGGGGGCCGATTGGCAGGAATTGGTCGGAGTACCGGCCGGATGAGGCGTCGGTGAAATATCATCTGGG
GCGGTTTGTTCATGATACTCGTATGGTCTCGTCTGATAAGGCTGTTGTGAAGCGAAACTGGCTTGATGCGTATACGCTGG
TGACGCAACGTGCGGCTAATACGCTTAATGAGCATGCAAAAAAACATAATCCTTTTGACCGTTCCGAGACGCAACGTGTC
AGCGTGCAGATTCTCGGGATGGTCCAGATTTCAGCCGAGAGCTGGCAGATTGACTGGAAGGAGTCTTCATGGGGTAAGCG
TGGGGAGCCTTTTGGTGATGAATTCTGGAGAGGGATCTTCAGCATTGCGCTGAAAAAACCCGAGAGCGAACAGCAACTGG
CTGCTAATCCGATAGGGTTGTTTATCGATGAGTTTCACTGGTCAAAAATTCAACGTTAA

Upstream 100 bases:

>100_bases
AGCGTGGGCTTCGGCTATGATACAGTCTTTGCAGAATGCCCGGCAGGAGAGTTCCCGGTCGGCAAAGGGTAATGGCGATA
ATTTATAATGACGTTTTGTG

Downstream 100 bases:

>100_bases
GGTTTTATGAGTAAAAGGTATATGGTTTCTTCTGGATTGCTTGCGCTGTGTATGGCGAGTTCGGGATGCAGTCAGGCGGC
TGAAGGGACATTTGTGGAGG

Product: Conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSKEASGRKWSPEGGLDTPYKRARQEWDNRMGSAVIQAKNWRLATFATLLLVAFPSLLGLVYLGAQPKAVPHIVEVSADG
KAVYRGPIGRNWSEYRPDEASVKYHLGRFVHDTRMVSSDKAVVKRNWLDAYTLVTQRAANTLNEHAKKHNPFDRSETQRV
SVQILGMVQISAESWQIDWKESSWGKRGEPFGDEFWRGIFSIALKKPESEQQLAANPIGLFIDEFHWSKIQR

Sequences:

>Translated_232_residues
MSKEASGRKWSPEGGLDTPYKRARQEWDNRMGSAVIQAKNWRLATFATLLLVAFPSLLGLVYLGAQPKAVPHIVEVSADG
KAVYRGPIGRNWSEYRPDEASVKYHLGRFVHDTRMVSSDKAVVKRNWLDAYTLVTQRAANTLNEHAKKHNPFDRSETQRV
SVQILGMVQISAESWQIDWKESSWGKRGEPFGDEFWRGIFSIALKKPESEQQLAANPIGLFIDEFHWSKIQR
>Mature_231_residues
SKEASGRKWSPEGGLDTPYKRARQEWDNRMGSAVIQAKNWRLATFATLLLVAFPSLLGLVYLGAQPKAVPHIVEVSADGK
AVYRGPIGRNWSEYRPDEASVKYHLGRFVHDTRMVSSDKAVVKRNWLDAYTLVTQRAANTLNEHAKKHNPFDRSETQRVS
VQILGMVQISAESWQIDWKESSWGKRGEPFGDEFWRGIFSIALKKPESEQQLAANPIGLFIDEFHWSKIQR

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26454; Mature: 26323

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEASGRKWSPEGGLDTPYKRARQEWDNRMGSAVIQAKNWRLATFATLLLVAFPSLLGL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEHCCCCHHHHHHHHHHHHHHHHHHH
VYLGAQPKAVPHIVEVSADGKAVYRGPIGRNWSEYRPDEASVKYHLGRFVHDTRMVSSDK
HHCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
AVVKRNWLDAYTLVTQRAANTLNEHAKKHNPFDRSETQRVSVQILGMVQISAESWQIDWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEEEEEEEECCCCEEEECC
ESSWGKRGEPFGDEFWRGIFSIALKKPESEQQLAANPIGLFIDEFHWSKIQR
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKEASGRKWSPEGGLDTPYKRARQEWDNRMGSAVIQAKNWRLATFATLLLVAFPSLLGL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEHCCCCHHHHHHHHHHHHHHHHHHH
VYLGAQPKAVPHIVEVSADGKAVYRGPIGRNWSEYRPDEASVKYHLGRFVHDTRMVSSDK
HHCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
AVVKRNWLDAYTLVTQRAANTLNEHAKKHNPFDRSETQRVSVQILGMVQISAESWQIDWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEEEEEEEECCCCEEEECC
ESSWGKRGEPFGDEFWRGIFSIALKKPESEQQLAANPIGLFIDEFHWSKIQR
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]