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The map label for this gene is rfaH [C]

Identifier: 194334318

GI number: 194334318

Start: 1652451

End: 1652969

Strand: Reverse

Name: rfaH [C]

Synonym: Paes_1511

Alternate gene names: 194334318

Gene position: 1652969-1652451 (Counterclockwise)

Preceding gene: 194334321

Following gene: 194334317

Centisome position: 65.78

GC content: 49.52

Gene sequence:

>519_bases
ATGGACGAGACTGGAAACCTTTGCTGGTATGCAGTTTACGTTCGTTCCCGCTTTGAAAAAAAGGTGCATCTGCTGCTGCA
GGAGAAGGGCATTGTAAGTTTTCTGCCGCTTGTCGATACCTGGCGTCAGTGGAGCGACAGGAAGAAAAAAGTGAGCATGC
CGCTTTTTCGTGGTTATGTTTTTGTCAGAATTCATTACAGGCAGGATCACCCTTTTGTTCTCGACACCGATGGGGTTGTC
AAATTTATCGGGATCGGCAGAGCAGCTTCGGTTATTCGCGATCGCGATATTGAGTGGATAAAGATTCTCACCGGTGAGCC
TGATGTCCGTAAAGAGGTTCTGCCGCTGCTTCCGCCGGGCAAACAGGTCAAGGTGATCGCCGGACCGTTTGTCGGGCTTG
AGGGTGTTGTTCGTAAGGATGGCCGGGAATCAAAACTTGTTGTGTATTTCGAAAGTATCATGCAGGGGATAGAGGTGACG
ATCAATGCGGAGTATCTCAGCCCTCTTTCCGATACGTAA

Upstream 100 bases:

>100_bases
AGAAGTAGAGAGTACGTGTATGTTTGTTGTGAATATACGCTTCTCTATTGAACGAGTGTAGTATATTAAACGAGATAGAA
AAAAATTCAGGGAGTATGTT

Downstream 100 bases:

>100_bases
GTTCTAACAGGATTGCTTTGAATAAAATACTTGTTACCGGCGCAGCCGGTTTTATCGGTTTCCACGTCAGCCGCCGTCTG
CTTGAACGCGGCGACGAGGT

Product: NusG antitermination factor

Products: NA

Alternate protein names: Transcription Antitermination Protein NusG; Nusg Antitermination Factor; Transcriptional Regulator; NGN Domain Protein; Transcription Antiterminator; Transcription Termination Factor NusG Domain Protein; Transcriptional Antiterminator; Transcriptional Activator RfaH; Ngn DomaiN-Containing Protein; Transcription Termination/Antitermination Factor NusG; Transcription Antitermination Protein; NusG/RfaH Family Transcriptional Regulator

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MDETGNLCWYAVYVRSRFEKKVHLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGYVFVRIHYRQDHPFVLDTDGVV
KFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLPPGKQVKVIAGPFVGLEGVVRKDGRESKLVVYFESIMQGIEVT
INAEYLSPLSDT

Sequences:

>Translated_172_residues
MDETGNLCWYAVYVRSRFEKKVHLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGYVFVRIHYRQDHPFVLDTDGVV
KFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLPPGKQVKVIAGPFVGLEGVVRKDGRESKLVVYFESIMQGIEVT
INAEYLSPLSDT
>Mature_172_residues
MDETGNLCWYAVYVRSRFEKKVHLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGYVFVRIHYRQDHPFVLDTDGVV
KFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLPPGKQVKVIAGPFVGLEGVVRKDGRESKLVVYFESIMQGIEVT
INAEYLSPLSDT

Specific function: Transcriptional Activator Of Hemolysin Synthesis And Secretion, Also Required For Expression Of Sex Factor And Lipopolysaccharide Biosynthesis Genes. Transcriptional Activator Of Rfad/Htrm And Htrl. [C]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19790; Mature: 19790

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDETGNLCWYAVYVRSRFEKKVHLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGYV
CCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCHHHCCCCCHHCCEE
FVRIHYRQDHPFVLDTDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLPPG
EEEEEEECCCCEEEECCCEEEEEECCHHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCCC
KQVKVIAGPFVGLEGVVRKDGRESKLVVYFESIMQGIEVTINAEYLSPLSDT
CEEEEEECCCCCCCHHCCCCCCCCEEEEEEHHHHCCEEEEEEHHHCCCCCCC
>Mature Secondary Structure
MDETGNLCWYAVYVRSRFEKKVHLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGYV
CCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCHHHCCCCCHHCCEE
FVRIHYRQDHPFVLDTDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLPPG
EEEEEEECCCCEEEECCCEEEEEECCHHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCCC
KQVKVIAGPFVGLEGVVRKDGRESKLVVYFESIMQGIEVTINAEYLSPLSDT
CEEEEEECCCCCCCHHCCCCCCCCEEEEEEHHHHCCEEEEEEHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA