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The map label for this gene is ygcJ [H]

Identifier: 194334223

GI number: 194334223

Start: 1540241

End: 1541284

Strand: Reverse

Name: ygcJ [H]

Synonym: Paes_1415

Alternate gene names: 194334223

Gene position: 1541284-1540241 (Counterclockwise)

Preceding gene: 194334224

Following gene: 194334222

Centisome position: 61.33

GC content: 45.5

Gene sequence:

>1044_bases
ATGAGCATAACAAATCCATTCAGGAACACCCGAATTGAATATCATATTCTTCAGTCTTTCCCTGTGACATGCCTGAACCG
TGACGATGTTGGTGCGCCAAAAACAGCGATAGTCGGCGGAAGCACCCGAGCCCGTGTCAGTTCACAATGCTGGAAACGTC
AGGTGCGACTTTCGATGCAGGATTTCGGCATCAAACTTGGAATACGATCGAAAAAAGTTTCAGAATTCGTTGCAAAAGCC
TGCCTTCAAAAAGGAGCATCGGAAGAACAGGCCGCAGAATGTGGAAAAGTAATTTCCGATTCATTCAGTAAGGATACGCT
GTTTTTTTTCAGTGAATCCGAAGCTCAGGCATTTGCTGATTATGCTCGAGAAAAAAATTTTGATAGTAAAAATCTGAATG
ATAAGGAGATCCGAAAAGTAGCAAAAAAAGCCCTGAACCCTGCAATTGACGGGCTTGATATTGCACTTTTCGGACGGATG
GTTGCCCAGGCTACTGACCTGAATATTGAAGCTGCCGCATCATTCTCCCATGCCATTTCCACTCACAAAGTAAGCAACGA
GGTGGAGTTTTTCACCGCCTTAGACGATTTAGCTGAAGAACCGGGTTCCGCACATATGGGTAGCCTTGAATTCAATTCAG
CCACCTATTACCGATACATCAGCCTCGATCTTGGCCAATTATGGGAGAGCATCGGAGGAGAACATCTTGCTGAAGCCGTA
GAATCCTTGACCAAAGCGCTGTTTGTTGCGGTCCCAAGTGCGCGTCAGACAACTCAATCAGGAGCATCTCCCTGGGAGTT
TGCTAAAATTTTCATCCGGAAAGGCCAGCGATTGCAGGTGCCTTTTGAAACGGCAGTCAAAGCGAAGGACGGGGGATACC
TTCAACCAAGCATTACAGCACTCACCGACTATCTGACAAAAAAAGAAGCCTTGGCGGGATCATTATTTGGCAAAGAAAAA
GAATTTACTTTCGGCGAGGACGTAAACTTCAGCATTGATGATCTTATTAAGGGATTGAAACTAACTGTAGCGGAGGTTCA
ATGA

Upstream 100 bases:

>100_bases
AAGTTTTAAGCAAGGCATCGGACGTGGCAGGGCTTTTGGCTTTGGTCTGCTTCAGATAGCCCCATTAAAAGTTTCATTCA
CCAACTAACCAGTTGCCATT

Downstream 100 bases:

>100_bases
GTAACGTATACCTCTTGCTTTGGCTTGAAGCACCATTGCAGTCATGGGGGGCTGACTCGAGATTTGGTCGAAGGGGCACA
CTCGAATTCCCAACAAAATC

Product: CRISPR-associated Cse4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSITNPFRNTRIEYHILQSFPVTCLNRDDVGAPKTAIVGGSTRARVSSQCWKRQVRLSMQDFGIKLGIRSKKVSEFVAKA
CLQKGASEEQAAECGKVISDSFSKDTLFFFSESEAQAFADYAREKNFDSKNLNDKEIRKVAKKALNPAIDGLDIALFGRM
VAQATDLNIEAAASFSHAISTHKVSNEVEFFTALDDLAEEPGSAHMGSLEFNSATYYRYISLDLGQLWESIGGEHLAEAV
ESLTKALFVAVPSARQTTQSGASPWEFAKIFIRKGQRLQVPFETAVKAKDGGYLQPSITALTDYLTKKEALAGSLFGKEK
EFTFGEDVNFSIDDLIKGLKLTVAEVQ

Sequences:

>Translated_347_residues
MSITNPFRNTRIEYHILQSFPVTCLNRDDVGAPKTAIVGGSTRARVSSQCWKRQVRLSMQDFGIKLGIRSKKVSEFVAKA
CLQKGASEEQAAECGKVISDSFSKDTLFFFSESEAQAFADYAREKNFDSKNLNDKEIRKVAKKALNPAIDGLDIALFGRM
VAQATDLNIEAAASFSHAISTHKVSNEVEFFTALDDLAEEPGSAHMGSLEFNSATYYRYISLDLGQLWESIGGEHLAEAV
ESLTKALFVAVPSARQTTQSGASPWEFAKIFIRKGQRLQVPFETAVKAKDGGYLQPSITALTDYLTKKEALAGSLFGKEK
EFTFGEDVNFSIDDLIKGLKLTVAEVQ
>Mature_346_residues
SITNPFRNTRIEYHILQSFPVTCLNRDDVGAPKTAIVGGSTRARVSSQCWKRQVRLSMQDFGIKLGIRSKKVSEFVAKAC
LQKGASEEQAAECGKVISDSFSKDTLFFFSESEAQAFADYAREKNFDSKNLNDKEIRKVAKKALNPAIDGLDIALFGRMV
AQATDLNIEAAASFSHAISTHKVSNEVEFFTALDDLAEEPGSAHMGSLEFNSATYYRYISLDLGQLWESIGGEHLAEAVE
SLTKALFVAVPSARQTTQSGASPWEFAKIFIRKGQRLQVPFETAVKAKDGGYLQPSITALTDYLTKKEALAGSLFGKEKE
FTFGEDVNFSIDDLIKGLKLTVAEVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=327, Percent_Identity=36.697247706422, Blast_Score=157, Evalue=8e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 38188; Mature: 38056

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITNPFRNTRIEYHILQSFPVTCLNRDDVGAPKTAIVGGSTRARVSSQCWKRQVRLSMQ
CCCCCCCHHCCEEEEEECCCCCEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
DFGIKLGIRSKKVSEFVAKACLQKGASEEQAAECGKVISDSFSKDTLFFFSESEAQAFAD
HCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
YAREKNFDSKNLNDKEIRKVAKKALNPAIDGLDIALFGRMVAQATDLNIEAAASFSHAIS
HHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
THKVSNEVEFFTALDDLAEEPGSAHMGSLEFNSATYYRYISLDLGQLWESIGGEHLAEAV
HHHCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCHHHHHHHHCHHHHHHHH
ESLTKALFVAVPSARQTTQSGASPWEFAKIFIRKGQRLQVPFETAVKAKDGGYLQPSITA
HHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCEEECCHHHHHCCCCCCCCCCHHHH
LTDYLTKKEALAGSLFGKEKEFTFGEDVNFSIDDLIKGLKLTVAEVQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHEEEECC
>Mature Secondary Structure 
SITNPFRNTRIEYHILQSFPVTCLNRDDVGAPKTAIVGGSTRARVSSQCWKRQVRLSMQ
CCCCCCHHCCEEEEEECCCCCEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
DFGIKLGIRSKKVSEFVAKACLQKGASEEQAAECGKVISDSFSKDTLFFFSESEAQAFAD
HCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
YAREKNFDSKNLNDKEIRKVAKKALNPAIDGLDIALFGRMVAQATDLNIEAAASFSHAIS
HHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
THKVSNEVEFFTALDDLAEEPGSAHMGSLEFNSATYYRYISLDLGQLWESIGGEHLAEAV
HHHCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCHHHHHHHHCHHHHHHHH
ESLTKALFVAVPSARQTTQSGASPWEFAKIFIRKGQRLQVPFETAVKAKDGGYLQPSITA
HHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCEEECCHHHHHCCCCCCCCCCHHHH
LTDYLTKKEALAGSLFGKEKEFTFGEDVNFSIDDLIKGLKLTVAEVQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]