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The map label for this gene is rhaS [C]

Identifier: 194334209

GI number: 194334209

Start: 1523234

End: 1524076

Strand: Reverse

Name: rhaS [C]

Synonym: Paes_1401

Alternate gene names: 194334209

Gene position: 1524076-1523234 (Counterclockwise)

Preceding gene: 194334210

Following gene: 194334208

Centisome position: 60.65

GC content: 48.64

Gene sequence:

>843_bases
ATGATCATACCTGATACCCCTTTTAATCCTGCTTCTGCTGATTTTTTTGGTATCTATCCTCTTACGCGCTCTTTGCCGGA
ATTGCAGGATCTTTCAGTCCGATTCACTCTTTTTCATATTGTCTGGTTTACCGGAGAGTCTTCTTCGCAATATGTGATTG
ATTTCGAGCGATATCCCATTGCGGCCGACAGTCTCTATTGCCTCGGCCCCTGGCAGGTGCATAGGGTTTCCGGTGAGCCT
GCCGAAGGGATACGGATCATTTTTTCCGGTGACATTTACGGCGATGTTGTCAATGATGATGTTCGCTGGCTGTTTAATCC
TCTGGTCAATGACGGGGTCAGGCTCAAGGCTGATATTGTCGAACCTTTACGAATGCTGCTGCGTCTTATGGTACGCGAGT
CCTCTGGTGCAGGTGAGACAGATATGCTCAAGGCCTATCTCAAAGCTTTTCTTTTGCATCTGATCCGCTCCGGGTCTGGC
GAAAGGATTTCGTTCGGTGTCGATGCGGCGCGCCTCATGATCCTTTTTTCTCTTGTCGATACGCACTACAGGAAGGAGCG
CAAGGTCTCCTTTTATGCGTCAAGGATAGGGTTAAGTCCGAAGCGTCTCAATGAGATTCTCAAAATGGCTACCGGTTTGA
CGCTGACCGCTCTTCTTCATTACCGGCTGATTATCGAGGCCCGGCGCCAGATCAGTTACGGTAAGAGGAATTTCAAGGAG
ATCGCTTTTGATCTGGGCTTCAGTGAACAGGCCTATTTCAGCAGGTTTTTTAAGAAAAAGACAGGACAGACGCCCGAAGC
CTTTCGGCAGCAAATGTTCAAATTGTCCAAACAAAGCGGCTGA

Upstream 100 bases:

>100_bases
CTACGCCTTTGACTCTGGTGCTGATTCCCTGTTTGTACATGATTGGTTTTGATATCCGTTCTTTATGGAAAAACATCCGT
AAGCCTCAGGCATCATAACG

Downstream 100 bases:

>100_bases
TCGTATACGTGGAACGTTTTTTTTGATTGTAGATTGTCAGCATGCTATAACACATGACGGGCTGGATGTTTGCGCTCTGC
GAGCGGCCTGCTGTTCAGGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator PobR; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulatory Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator AraC Family Protein; PobR Regulator; Transcriptional Regulator Arac Family; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; AraC Family Transcriptional Regulatory Protein; Regulatory Helix-Turn-Helix Protein AraC Family; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; AraC-Type Transcription Regulator; AraC-Type Transcriptional Regulator; Helix-Turn-Helix AraC Type; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MIIPDTPFNPASADFFGIYPLTRSLPELQDLSVRFTLFHIVWFTGESSSQYVIDFERYPIAADSLYCLGPWQVHRVSGEP
AEGIRIIFSGDIYGDVVNDDVRWLFNPLVNDGVRLKADIVEPLRMLLRLMVRESSGAGETDMLKAYLKAFLLHLIRSGSG
ERISFGVDAARLMILFSLVDTHYRKERKVSFYASRIGLSPKRLNEILKMATGLTLTALLHYRLIIEARRQISYGKRNFKE
IAFDLGFSEQAYFSRFFKKKTGQTPEAFRQQMFKLSKQSG

Sequences:

>Translated_280_residues
MIIPDTPFNPASADFFGIYPLTRSLPELQDLSVRFTLFHIVWFTGESSSQYVIDFERYPIAADSLYCLGPWQVHRVSGEP
AEGIRIIFSGDIYGDVVNDDVRWLFNPLVNDGVRLKADIVEPLRMLLRLMVRESSGAGETDMLKAYLKAFLLHLIRSGSG
ERISFGVDAARLMILFSLVDTHYRKERKVSFYASRIGLSPKRLNEILKMATGLTLTALLHYRLIIEARRQISYGKRNFKE
IAFDLGFSEQAYFSRFFKKKTGQTPEAFRQQMFKLSKQSG
>Mature_280_residues
MIIPDTPFNPASADFFGIYPLTRSLPELQDLSVRFTLFHIVWFTGESSSQYVIDFERYPIAADSLYCLGPWQVHRVSGEP
AEGIRIIFSGDIYGDVVNDDVRWLFNPLVNDGVRLKADIVEPLRMLLRLMVRESSGAGETDMLKAYLKAFLLHLIRSGSG
ERISFGVDAARLMILFSLVDTHYRKERKVSFYASRIGLSPKRLNEILKMATGLTLTALLHYRLIIEARRQISYGKRNFKE
IAFDLGFSEQAYFSRFFKKKTGQTPEAFRQQMFKLSKQSG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32073; Mature: 32073

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIPDTPFNPASADFFGIYPLTRSLPELQDLSVRFTLFHIVWFTGESSSQYVIDFERYPI
CCCCCCCCCCCCCCEEEECHHHCCCCHHHHHHHHEEEEEEEEEECCCCCCEEEEECCCCC
AADSLYCLGPWQVHRVSGEPAEGIRIIFSGDIYGDVVNDDVRWLFNPLVNDGVRLKADIV
CCCCEEEECCCEEEECCCCCCCCEEEEEECCEECCCCCCHHHHHHHHHHCCCCEEHHHHH
EPLRMLLRLMVRESSGAGETDMLKAYLKAFLLHLIRSGSGERISFGVDAARLMILFSLVD
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHH
THYRKERKVSFYASRIGLSPKRLNEILKMATGLTLTALLHYRLIIEARRQISYGKRNFKE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFDLGFSEQAYFSRFFKKKTGQTPEAFRQQMFKLSKQSG
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIPDTPFNPASADFFGIYPLTRSLPELQDLSVRFTLFHIVWFTGESSSQYVIDFERYPI
CCCCCCCCCCCCCCEEEECHHHCCCCHHHHHHHHEEEEEEEEEECCCCCCEEEEECCCCC
AADSLYCLGPWQVHRVSGEPAEGIRIIFSGDIYGDVVNDDVRWLFNPLVNDGVRLKADIV
CCCCEEEECCCEEEECCCCCCCCEEEEEECCEECCCCCCHHHHHHHHHHCCCCEEHHHHH
EPLRMLLRLMVRESSGAGETDMLKAYLKAFLLHLIRSGSGERISFGVDAARLMILFSLVD
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHH
THYRKERKVSFYASRIGLSPKRLNEILKMATGLTLTALLHYRLIIEARRQISYGKRNFKE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFDLGFSEQAYFSRFFKKKTGQTPEAFRQQMFKLSKQSG
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA