Definition Prosthecochloris aestuarii DSM 271 chromosome, complete genome.
Accession NC_011059
Length 2,512,923

Click here to switch to the map view.

The map label for this gene is rbpE [H]

Identifier: 194334049

GI number: 194334049

Start: 1344123

End: 1344395

Strand: Reverse

Name: rbpE [H]

Synonym: Paes_1236

Alternate gene names: 194334049

Gene position: 1344395-1344123 (Counterclockwise)

Preceding gene: 194334054

Following gene: 194334047

Centisome position: 53.5

GC content: 45.05

Gene sequence:

>273_bases
ATGAACATTTACATTGGCAATCTGGATTACGGTGTTACAGAAGAAGATCTTCGTGAGGCCTTTGGCGAATTCGGTGATGT
TTCAAGCGCAAACATCATAACTGACAAATTTACCGGCCGTTCAAAAGGCTTCGGTTTTGTTGAAATGTCGAGCAGTGATG
ACGCCAACGAAGCTATCGAATCTCTGAATGACACGGATCTCAATGGTCGCACCATCAAAGTTAACGAGGCAAAACCTCGT
GCTGAGCGCCCTGCAAGACGTTACCAGTATTAA

Upstream 100 bases:

>100_bases
ACGTTAACCACAGAATGGTTTGGCGCTTTCAGGTGATTTGTGCTCTTGATTATTTGTAAGCGTATAGTATGATCAAAGCA
CAAAGTTTCACATAGAAAAT

Downstream 100 bases:

>100_bases
TTGTCAGCTGGATTTTGAAAGCCGCCGTTTTGGCGGCTTTTTTTTTTACCCGTCAGTTATAGTGATGGCTTTTCCTGTTT
TTATCTGTTTGATGCGAATC

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNIYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESLNDTDLNGRTIKVNEAKPR
AERPARRYQY

Sequences:

>Translated_90_residues
MNIYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESLNDTDLNGRTIKVNEAKPR
AERPARRYQY
>Mature_90_residues
MNIYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESLNDTDLNGRTIKVNEAKPR
AERPARRYQY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=41.4634146341463, Blast_Score=73, Evalue=4e-14,
Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=41.4634146341463, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI46367787, Length=82, Percent_Identity=40.2439024390244, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI45238849, Length=82, Percent_Identity=40.2439024390244, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI49355761, Length=78, Percent_Identity=39.7435897435897, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI49355765, Length=78, Percent_Identity=39.7435897435897, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI188219593, Length=88, Percent_Identity=36.3636363636364, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI188219591, Length=88, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI208431836, Length=84, Percent_Identity=40.4761904761905, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI4504715, Length=84, Percent_Identity=40.4761904761905, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI208431833, Length=84, Percent_Identity=40.4761904761905, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI116734696, Length=80, Percent_Identity=40, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI116734694, Length=80, Percent_Identity=40, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI116734698, Length=80, Percent_Identity=40, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=40.7407407407407, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI283945537, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI283945529, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI115511032, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI291084655, Length=88, Percent_Identity=38.6363636363636, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI221316769, Length=78, Percent_Identity=39.7435897435897, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI221316767, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI221316773, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI221316771, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI9558733, Length=64, Percent_Identity=46.875, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI4507499, Length=83, Percent_Identity=37.3493975903614, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI77695912, Length=83, Percent_Identity=37.3493975903614, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI303305009, Length=77, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI4502847, Length=87, Percent_Identity=32.183908045977, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI221316765, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=36.8421052631579, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI45439316, Length=77, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI5174637, Length=77, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI4758876, Length=73, Percent_Identity=39.7260273972603, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=40, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17539498, Length=89, Percent_Identity=40.4494382022472, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32564506, Length=89, Percent_Identity=42.6966292134831, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI32564504, Length=89, Percent_Identity=42.6966292134831, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17531963, Length=89, Percent_Identity=42.6966292134831, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17531965, Length=89, Percent_Identity=42.6966292134831, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=41.5584415584416, Blast_Score=68, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17532863, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17554788, Length=71, Percent_Identity=40.8450704225352, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=36.8421052631579, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17505625, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17537143, Length=81, Percent_Identity=41.9753086419753, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567133, Length=93, Percent_Identity=36.5591397849462, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567131, Length=93, Percent_Identity=36.5591397849462, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324312, Length=79, Percent_Identity=41.7721518987342, Blast_Score=73, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6321013, Length=82, Percent_Identity=40.2439024390244, Blast_Score=68, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324449, Length=81, Percent_Identity=37.037037037037, Blast_Score=63, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582417, Length=82, Percent_Identity=41.4634146341463, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45550943, Length=82, Percent_Identity=41.4634146341463, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24582419, Length=82, Percent_Identity=41.4634146341463, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24582423, Length=82, Percent_Identity=41.4634146341463, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24582421, Length=82, Percent_Identity=41.4634146341463, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=42.5, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=42.5, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17647301, Length=77, Percent_Identity=46.7532467532467, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=37.8048780487805, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=39.5061728395062, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=39.5061728395062, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=39.5061728395062, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=39.5061728395062, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=39.5061728395062, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=39.5061728395062, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=39.5061728395062, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24654797, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552715, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24654810, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24654800, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24654793, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24654807, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI17136378, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24654804, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10076; Mature: 10076

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNIYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIE
CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHH
SLNDTDLNGRTIKVNEAKPRAERPARRYQY
HCCCCCCCCCEEEEECCCCCCCCCHHHCCC
>Mature Secondary Structure
MNIYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIE
CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHH
SLNDTDLNGRTIKVNEAKPRAERPARRYQY
HCCCCCCCCCEEEEECCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]