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The map label for this gene is yggB [C]

Identifier: 194333953

GI number: 194333953

Start: 1241316

End: 1242146

Strand: Reverse

Name: yggB [C]

Synonym: Paes_1137

Alternate gene names: 194333953

Gene position: 1242146-1241316 (Counterclockwise)

Preceding gene: 194333954

Following gene: 194333952

Centisome position: 49.43

GC content: 50.42

Gene sequence:

>831_bases
ATGAACGTCTCAGACAATCTTGTCGATCTTTTCAGAAACTTTTCCATAGATATCTTGCTGCAGATCGTACTCATCGGCAG
TGTATCATGGCTTCTGATTACGCTCTTTTCCAAATGGGTTCCAATCCTTGCCAACACAATATCCGGCCGGTTCCGGTTTC
GGCTGCTTGCGCTCGTGCCAATTTTCAGACTGGGGGTATTTATCGCAGCACTGTTGCTTATCCTCAACCGGGTCATAGAA
CCGCAGATTGAAAACATCATCGCGCTGATAAGCCTTCTCGGTCTGGGTCTTGGCTTCGCATTCAAGGATTATGTCAGCAG
TCTTATAGCAGGCGTGGTAACCCTTTATGAAACGCCATACCGCCCAGGGGATTGGATCGAGGTTGAGGGAGCGTATGGCG
AAGTCAGGGCGATCAATCTCCGCAGCGTGGAAATCGTCACGCCGGACAGTACCGTGGTTATCATCCCGCATCTGAAAATA
TGGAATCAGCTTCTTTTCAACGCTAATGACGGTCGCCGGCAACTGCTGTGTGTCGCAGATTTTTACCTCCATCCTGATCA
CAACGGAAGGGAGGTTCAGAATATTCTCTATGACGTTGCTTCGACAAGCGCTTACCTGCAGGCGGACCAGCCAATCAGGG
TGGTCGTCCATGAGCAGCTATGGGGAACACACTACAGGCTCAAGGCCTACCCGATTGATCCAAGGCAGCAGTTCGAGTTC
ATAACGGACCTGACCATCCGCAGCAAAGAGATTCTTGCTGAAAAAGGCATCCGGTTTGCCTCAGCACCAGCGATTTCGCA
AGAGAACAACCTTTCGAGCAAAACGGCTTGA

Upstream 100 bases:

>100_bases
GGATGGAACCGTGTCAGTTTCAGCCCGCGGATATCCGGCGGTTCGACAGTTTCTCAAAAGTGAAGGCTATCTGGTCGATG
CATTTTAAACGGGAAAAACT

Downstream 100 bases:

>100_bases
TGAATATGTATGATGATCAGCCTCTTCACCTGAAGCGCCCTTCTGCTTCGATCTGCCCCGTTTTGGATCTTCAGTATTAC
TGTTGCTTTCTTTGGAAATG

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: Small-Conductance Mechanosensitive Channel; Mechanosensitive Ion Channel MscS; Transporter MscS Family; Mscs Mechanosensitive Ion Channel; Helix-Turn-Helix AraC Type; Mechanosensitive Channel

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MNVSDNLVDLFRNFSIDILLQIVLIGSVSWLLITLFSKWVPILANTISGRFRFRLLALVPIFRLGVFIAALLLILNRVIE
PQIENIIALISLLGLGLGFAFKDYVSSLIAGVVTLYETPYRPGDWIEVEGAYGEVRAINLRSVEIVTPDSTVVIIPHLKI
WNQLLFNANDGRRQLLCVADFYLHPDHNGREVQNILYDVASTSAYLQADQPIRVVVHEQLWGTHYRLKAYPIDPRQQFEF
ITDLTIRSKEILAEKGIRFASAPAISQENNLSSKTA

Sequences:

>Translated_276_residues
MNVSDNLVDLFRNFSIDILLQIVLIGSVSWLLITLFSKWVPILANTISGRFRFRLLALVPIFRLGVFIAALLLILNRVIE
PQIENIIALISLLGLGLGFAFKDYVSSLIAGVVTLYETPYRPGDWIEVEGAYGEVRAINLRSVEIVTPDSTVVIIPHLKI
WNQLLFNANDGRRQLLCVADFYLHPDHNGREVQNILYDVASTSAYLQADQPIRVVVHEQLWGTHYRLKAYPIDPRQQFEF
ITDLTIRSKEILAEKGIRFASAPAISQENNLSSKTA
>Mature_276_residues
MNVSDNLVDLFRNFSIDILLQIVLIGSVSWLLITLFSKWVPILANTISGRFRFRLLALVPIFRLGVFIAALLLILNRVIE
PQIENIIALISLLGLGLGFAFKDYVSSLIAGVVTLYETPYRPGDWIEVEGAYGEVRAINLRSVEIVTPDSTVVIIPHLKI
WNQLLFNANDGRRQLLCVADFYLHPDHNGREVQNILYDVASTSAYLQADQPIRVVVHEQLWGTHYRLKAYPIDPRQQFEF
ITDLTIRSKEILAEKGIRFASAPAISQENNLSSKTA

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789291, Length=163, Percent_Identity=26.9938650306748, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31173; Mature: 31173

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVSDNLVDLFRNFSIDILLQIVLIGSVSWLLITLFSKWVPILANTISGRFRFRLLALVP
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IFRLGVFIAALLLILNRVIEPQIENIIALISLLGLGLGFAFKDYVSSLIAGVVTLYETPY
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RPGDWIEVEGAYGEVRAINLRSVEIVTPDSTVVIIPHLKIWNQLLFNANDGRRQLLCVAD
CCCCEEEEECCCCCEEEEEEEEEEEECCCCCEEEECCHHHHHHHHHCCCCCCEEEEEEEE
FYLHPDHNGREVQNILYDVASTSAYLQADQPIRVVVHEQLWGTHYRLKAYPIDPRQQFEF
EEECCCCCCHHHHHHHHHHHCCHHEEECCCCEEEEEEHHHCCCEEEEEEECCCHHHHHHH
ITDLTIRSKEILAEKGIRFASAPAISQENNLSSKTA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNVSDNLVDLFRNFSIDILLQIVLIGSVSWLLITLFSKWVPILANTISGRFRFRLLALVP
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IFRLGVFIAALLLILNRVIEPQIENIIALISLLGLGLGFAFKDYVSSLIAGVVTLYETPY
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RPGDWIEVEGAYGEVRAINLRSVEIVTPDSTVVIIPHLKIWNQLLFNANDGRRQLLCVAD
CCCCEEEEECCCCCEEEEEEEEEEEECCCCCEEEECCHHHHHHHHHCCCCCCEEEEEEEE
FYLHPDHNGREVQNILYDVASTSAYLQADQPIRVVVHEQLWGTHYRLKAYPIDPRQQFEF
EEECCCCCCHHHHHHHHHHHCCHHEEECCCCEEEEEEHHHCCCEEEEEEECCCHHHHHHH
ITDLTIRSKEILAEKGIRFASAPAISQENNLSSKTA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA