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The map label for this gene is rlpA [C]

Identifier: 193214295

GI number: 193214295

Start: 672734

End: 673315

Strand: Direct

Name: rlpA [C]

Synonym: Ctha_0576

Alternate gene names: 193214295

Gene position: 672734-673315 (Clockwise)

Preceding gene: 193214294

Following gene: 193214313

Centisome position: 20.43

GC content: 48.28

Gene sequence:

>582_bases
ATGGCCAACTTGCATCTAAAAATCCAGAAATGTTTATCTGCTAACATGAATCAACTTATGACAAAAATCGCTTTTCAACA
GATCTTAATCATCAGTATTTGCTTGCTAACCGTAACCGCGTGTACTTCCACCGTTCGCTATGCCACCAAATCATCGGCTA
CGCGCCCGTCCAGCGCCACGAGTTCTCAAAAAGCGCACCGTAGCGCGGCCACTACGAATACATCACAAAAAAAAGCCACT
GCAACCGAGACCTCGTCGTCGCAAAAGCTTACACAAACCGAATCGGGAAAAATTCTTGGTGAAGGGGAAGCCTCCTATTA
CGCCAACAAATTTCATGGAAAAACAACGGCAAGCGGCGAGCCTTACGACATGTACAGCTTCACTGCAGCACATCGGACGC
TGCCGTTTGGAACGGTGCTGCGCGTGACCAACTTGGAAAATCAGAAAAGCGTGGTGGTTCGGGTGACTGATCGCGGCCCA
TGGAAAGCGCACCGAATTATCGATTTATCATTCATGGCAGCCAAATCGCTCGATATGCTGGGATCGGGGACAGCACAAGT
CCGCATCGAAAAATTGAATTAA

Upstream 100 bases:

>100_bases
CACATCTTGCAGAGCTCGGCGCAGACGGCATCATTACGGATTATCCCGATCGTGCTCATTTTTTATTGGAAAAGTAGTTT
TTTATGTCCAATTCCGTTTG

Downstream 100 bases:

>100_bases
GCAACATGTTCTGAGAAATGAAAAATTCGGATTTTTTTTCAAAATCATTTTGGATAATTCGATTTACACGCCTATATTTG
CAGCTCACTTCGGATTTGAA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MANLHLKIQKCLSANMNQLMTKIAFQQILIISICLLTVTACTSTVRYATKSSATRPSSATSSQKAHRSAATTNTSQKKAT
ATETSSSQKLTQTESGKILGEGEASYYANKFHGKTTASGEPYDMYSFTAAHRTLPFGTVLRVTNLENQKSVVVRVTDRGP
WKAHRIIDLSFMAAKSLDMLGSGTAQVRIEKLN

Sequences:

>Translated_193_residues
MANLHLKIQKCLSANMNQLMTKIAFQQILIISICLLTVTACTSTVRYATKSSATRPSSATSSQKAHRSAATTNTSQKKAT
ATETSSSQKLTQTESGKILGEGEASYYANKFHGKTTASGEPYDMYSFTAAHRTLPFGTVLRVTNLENQKSVVVRVTDRGP
WKAHRIIDLSFMAAKSLDMLGSGTAQVRIEKLN
>Mature_192_residues
ANLHLKIQKCLSANMNQLMTKIAFQQILIISICLLTVTACTSTVRYATKSSATRPSSATSSQKAHRSAATTNTSQKKATA
TETSSSQKLTQTESGKILGEGEASYYANKFHGKTTASGEPYDMYSFTAAHRTLPFGTVLRVTNLENQKSVVVRVTDRGPW
KAHRIIDLSFMAAKSLDMLGSGTAQVRIEKLN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=171, Percent_Identity=33.9181286549708, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 20996; Mature: 20865

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLHLKIQKCLSANMNQLMTKIAFQQILIISICLLTVTACTSTVRYATKSSATRPSSAT
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SSQKAHRSAATTNTSQKKATATETSSSQKLTQTESGKILGEGEASYYANKFHGKTTASGE
CHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHCCCCCEEECCCCHHHHHHCCCCCCCCCC
PYDMYSFTAAHRTLPFGTVLRVTNLENQKSVVVRVTDRGPWKAHRIIDLSFMAAKSLDML
CCCHHEEHHHHHCCCCHHEEEEECCCCCCEEEEEEECCCCCCEEEEEEEHHHHHHHHHHH
GSGTAQVRIEKLN
CCCCEEEEEEECC
>Mature Secondary Structure 
ANLHLKIQKCLSANMNQLMTKIAFQQILIISICLLTVTACTSTVRYATKSSATRPSSAT
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SSQKAHRSAATTNTSQKKATATETSSSQKLTQTESGKILGEGEASYYANKFHGKTTASGE
CHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHCCCCCEEECCCCHHHHHHCCCCCCCCCC
PYDMYSFTAAHRTLPFGTVLRVTNLENQKSVVVRVTDRGPWKAHRIIDLSFMAAKSLDML
CCCHHEEHHHHHCCCCHHEEEEECCCCCCEEEEEEECCCCCCEEEEEEEHHHHHHHHHHH
GSGTAQVRIEKLN
CCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]