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The map label for this gene is nusB

Identifier: 193214274

GI number: 193214274

Start: 653976

End: 654611

Strand: Direct

Name: nusB

Synonym: Ctha_0555

Alternate gene names: 193214274

Gene position: 653976-654611 (Clockwise)

Preceding gene: 193214273

Following gene: 193214275

Centisome position: 19.86

GC content: 41.04

Gene sequence:

>636_bases
ATGATTATTAGCCGTCGCCAAATACGAGAACTTGCTATGCAGGTGCTTTATGCCTATGAAGTCCGCAAAGAAAAAGTAGA
TAAGGTCGCTAAAGGAATTATTCCTGAGGATGTTGTTGCAGATATTAAAGCGAAGGATTTCATCTTTAAGATTATCAACA
GCGTCATCCAAAATATTCAGGACATCGACACGCACATCGCAAAACATGCGGACAATTGGGAATTGAACCGAATGGCCATT
ATTGATAAAAATTTGATGCGGATTGCCATTGCTGAAATGCTGTATCTTGACGACGTTCCGCCAAAAGTTTCCATCAATGA
AGCCATTGAAATTGCCAAACGCTACAGCACAGATAAAAGCAGCAAGTTTGTAAATGGCATTCTCGACGCAACTTACAATG
AAGTTAAATCAAAAGGAGTTTTGCATAAGTCGGGTCGTGGCTTAGTTGATTTACCCGCTAAAAAAGAGCGCGTCGCCAAT
CCGTTTCCATCAACACCACCGAAAAAGCCGGAAAATGTACCAAACCCATTTTCTACACCGTTCAAAAAAAATTCATCTGA
GCCGATAAGAAACCCTTTTGAAGGGAACAAGTCACCGCAACCACCACAAAAAACGCTCAGGCGCAAAAAAAAGTAA

Upstream 100 bases:

>100_bases
ATGCAGGAAAGCGTAAAAACACCAGCCATACGCGCCTGACGAAATACTTTTTAATGTTCAAGTTTAAATTTTACTTCTCT
AATCACACTGGTTCTTTATC

Downstream 100 bases:

>100_bases
TTCCATGCCTCAAGATGAAACGGGCACGAAAAACATCATCGCTATTGGCGATATTCACGGTTGTATTCTTTCCTTGAAAG
CACTAATCCAGAAACTTGAT

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MIISRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQDIDTHIAKHADNWELNRMAI
IDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSSKFVNGILDATYNEVKSKGVLHKSGRGLVDLPAKKERVAN
PFPSTPPKKPENVPNPFSTPFKKNSSEPIRNPFEGNKSPQPPQKTLRRKKK

Sequences:

>Translated_211_residues
MIISRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQDIDTHIAKHADNWELNRMAI
IDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSSKFVNGILDATYNEVKSKGVLHKSGRGLVDLPAKKERVAN
PFPSTPPKKPENVPNPFSTPFKKNSSEPIRNPFEGNKSPQPPQKTLRRKKK
>Mature_211_residues
MIISRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQDIDTHIAKHADNWELNRMAI
IDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSSKFVNGILDATYNEVKSKGVLHKSGRGLVDLPAKKERVAN
PFPSTPPKKPENVPNPFSTPFKKNSSEPIRNPFEGNKSPQPPQKTLRRKKK

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=122, Percent_Identity=32.7868852459016, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_CHLT3 (B3QV72)

Other databases:

- EMBL:   CP001100
- RefSeq:   YP_001995473.1
- GeneID:   6421599
- GenomeReviews:   CP001100_GR
- KEGG:   cts:Ctha_0555
- HOGENOM:   HBG734409
- OMA:   DLVECYT
- ProtClustDB:   CLSK637901
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 24013; Mature: 24013

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIISRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DIDTHIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKS
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
SKFVNGILDATYNEVKSKGVLHKSGRGLVDLPAKKERVANPFPSTPPKKPENVPNPFSTP
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
FKKNSSEPIRNPFEGNKSPQPPQKTLRRKKK
CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MIISRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DIDTHIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKS
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
SKFVNGILDATYNEVKSKGVLHKSGRGLVDLPAKKERVANPFPSTPPKKPENVPNPFSTP
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
FKKNSSEPIRNPFEGNKSPQPPQKTLRRKKK
CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA