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The map label for this gene is rbfA

Identifier: 193214187

GI number: 193214187

Start: 550322

End: 550699

Strand: Direct

Name: rbfA

Synonym: Ctha_0468

Alternate gene names: 193214187

Gene position: 550322-550699 (Clockwise)

Preceding gene: 193214186

Following gene: 193214191

Centisome position: 16.71

GC content: 44.71

Gene sequence:

>378_bases
ATGTCTATACGAACAGAGCGAGTCGCTGAATTGATTCAGCGCGAACTAAGCGGTATTTTTGAAAAAGAGCTGCCGCGCTC
AGGCGTTTTAACCACGATTGTGGGTGTCAAAATTACGCCAGATTTGAGCATTGCGCGCGTTTATGTTTCGATTTTGGGAA
GCAAAGAAATGGGCGCGTCGGTGATGGCTCACATTCAAAAGGAAAATAAACATTTCAGAAAGCTGCTTTCAAGCAAAATT
CGTCATCAATTTAAGCGGATGCCTTCGCTTGAATTTTATCAAGACGATTTGTTTGATCAAGCCGCACACATCAACGAACT
GATTCGCAAAGCAAACGAAGCCTCATCGCCCACCCCAAAGCCGGACGATGAAGCTTAA

Upstream 100 bases:

>100_bases
CGACATTGTCGAATCCTTTGAAACGGTTGAGACAAAACGAAAATTAGTCGTTAGTTAAAGCGAAGCAGGTTTTCAAACCT
GCTTTTCGCGGAGGAGTAGC

Downstream 100 bases:

>100_bases
CATTCTAAAGTTCCACATGATCACGGAACTTTTCTGAAGCGCGTGTTTGCAAGCAAAAATTCTAACGCCAGCAAAATCAA
CGCTGGCGTGAGAAACATGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSIRTERVAELIQRELSGIFEKELPRSGVLTTIVGVKITPDLSIARVYVSILGSKEMGASVMAHIQKENKHFRKLLSSKI
RHQFKRMPSLEFYQDDLFDQAAHINELIRKANEASSPTPKPDDEA

Sequences:

>Translated_125_residues
MSIRTERVAELIQRELSGIFEKELPRSGVLTTIVGVKITPDLSIARVYVSILGSKEMGASVMAHIQKENKHFRKLLSSKI
RHQFKRMPSLEFYQDDLFDQAAHINELIRKANEASSPTPKPDDEA
>Mature_124_residues
SIRTERVAELIQRELSGIFEKELPRSGVLTTIVGVKITPDLSIARVYVSILGSKEMGASVMAHIQKENKHFRKLLSSKIR
HQFKRMPSLEFYQDDLFDQAAHINELIRKANEASSPTPKPDDEA

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CHLT3 (B3QUN3)

Other databases:

- EMBL:   CP001100
- RefSeq:   YP_001995386.1
- ProteinModelPortal:   B3QUN3
- GeneID:   6421511
- GenomeReviews:   CP001100_GR
- KEGG:   cts:Ctha_0468
- HOGENOM:   HBG751055
- OMA:   RRTEKVA
- ProtClustDB:   CLSK637234
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14177; Mature: 14045

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRTERVAELIQRELSGIFEKELPRSGVLTTIVGVKITPDLSIARVYVSILGSKEMGAS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHH
VMAHIQKENKHFRKLLSSKIRHQFKRMPSLEFYQDDLFDQAAHINELIRKANEASSPTPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDDEA
CCCCC
>Mature Secondary Structure 
SIRTERVAELIQRELSGIFEKELPRSGVLTTIVGVKITPDLSIARVYVSILGSKEMGAS
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHH
VMAHIQKENKHFRKLLSSKIRHQFKRMPSLEFYQDDLFDQAAHINELIRKANEASSPTPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDDEA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA