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The map label for this gene is radA [H]

Identifier: 193212788

GI number: 193212788

Start: 1253017

End: 1254387

Strand: Direct

Name: radA [H]

Synonym: Cpar_1135

Alternate gene names: 193212788

Gene position: 1253017-1254387 (Clockwise)

Preceding gene: 193212782

Following gene: 193212789

Centisome position: 54.73

GC content: 62.44

Gene sequence:

>1371_bases
ATGGCTAAATCGACCGTTCGTTATATCTGCTCGGCCTGCGGAGCAGTTTCGCTGAAATACCAGGGGCGCTGCTTCGAGTG
CCAGAGCTGGGGCACGCTGGTTGAAACCCACGCCGAAGAACCGGACGCCAAAACCCGCAAGAAGCGCCCAGCCGGCTCCA
TACCTGAAGTGCAGAACCTCGATGACACCCCTCCGGAGGGATTCCACCGCTTGATGACCGGCATCGGCGAGCTCGACCGC
GTACTCGGCGGCGGGCTGATGGAGGCTTCGGCGATCCTCGTCGGCGGTGAACCGGGCATCGGCAAATCGACGCTGATGAT
CCAACTCGTTCCGCGACTGGCGGGCAAAAAAGTGCTGTACGTCGCGGGCGAGGAGTCGCCGAACCAGATTCGCGAACGCG
CCAGGAGGCTCTCAATCAAGGCTCCGAACCTGCGGCTCGTCTCCGAAGTGGCGCTCGAACGCATCCTCGACGCCATCGCG
AACGAGCAGCCGGAAATGGTGATCGTCGATTCAATCCAGACCGTCTATTCGAGCGACTACCAGAGTTCGGCAGGCACCAT
CACGCAGATTCGCGAATGCGCCGCCTCGCTCATCCGCGCGGCCAAGGAGCAGAACTTCATCCTGCTCATCATCGGCCACA
TCACCAAGGAGGGGTCACTGGCCGGGCCGAAGGCGCTGGAGCACATGGTCGATACGGTCATCCAGTTCGAGGGCGAAAAC
TACCAGCGCTACCGCATCGTCCGCTCGGTCAAAAACCGCTTCGGCCCGACCAACGAAATCGGCGTCTTCAAGATGGAGGA
AGACGGCCTGACAGAGGTCTCGAACCCGTCAGAGTTCTTCATTTCAGATCGACGCACGGACGTACCCGGCACGGCAGTGC
TAGCCGGAATCGAGGGGTCACGCGCGCTGATGGTGGAGGTGCAGGCGCTGGTGTCGCGAACCGGCTACTCGATGCCGCAG
CGCATCAGCACCGGATTCGACCTCAAGCGCATCGCCATCATCCTCGCCGTGCTCGAAAAGCGCTTGCAGTTCCAGACCGC
CGGGCAGGATGTGTTCGTCAAGATCGCGGGCGGCCTGAAACTGGTCGAACCGGCTGCAGACCTGGCCATTGCCGCTGCCG
TCGCCTCCGGATTGCAGGACAAGCCGTGCAACCCGACCGCCTGCTGCTGCGGCGAGATCGGCCTATCAGGCGAGCTGCGC
GCCATCAGCGACGGTGAGCGCCGCATCCGCGAGGCGGTGCATCTCGGCTTCAAATCGATCGTGCTGCCGGAGTCGAACAC
ACGCGAGCTGAAAGCGTCGATCAAAAAGCTGCCGATCAGAATCCACGGCTGCCGAACGCTGCACGAAGCGCTCGAAGCGA
TGGGGGTTTGA

Upstream 100 bases:

>100_bases
ACAGCAAGACCTCTGCATCAACGCACTCTATGTAATCAATAGAGTTGAAAGTTGCAAAGCTGCGGGCTTTGCGAAAAAAA
TCGACAGAAAGCACCGTTTC

Downstream 100 bases:

>100_bases
AGAGGAAAAATGGGAACGGCTTGGGCGAGATGAATAGCGATGCCAGGCAGGGTTGGGCAGGCACAAGACGCCCCTACAGG
TTTTCTGCCATTTTACCTGA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MAKSTVRYICSACGAVSLKYQGRCFECQSWGTLVETHAEEPDAKTRKKRPAGSIPEVQNLDDTPPEGFHRLMTGIGELDR
VLGGGLMEASAILVGGEPGIGKSTLMIQLVPRLAGKKVLYVAGEESPNQIRERARRLSIKAPNLRLVSEVALERILDAIA
NEQPEMVIVDSIQTVYSSDYQSSAGTITQIRECAASLIRAAKEQNFILLIIGHITKEGSLAGPKALEHMVDTVIQFEGEN
YQRYRIVRSVKNRFGPTNEIGVFKMEEDGLTEVSNPSEFFISDRRTDVPGTAVLAGIEGSRALMVEVQALVSRTGYSMPQ
RISTGFDLKRIAIILAVLEKRLQFQTAGQDVFVKIAGGLKLVEPAADLAIAAAVASGLQDKPCNPTACCCGEIGLSGELR
AISDGERRIREAVHLGFKSIVLPESNTRELKASIKKLPIRIHGCRTLHEALEAMGV

Sequences:

>Translated_456_residues
MAKSTVRYICSACGAVSLKYQGRCFECQSWGTLVETHAEEPDAKTRKKRPAGSIPEVQNLDDTPPEGFHRLMTGIGELDR
VLGGGLMEASAILVGGEPGIGKSTLMIQLVPRLAGKKVLYVAGEESPNQIRERARRLSIKAPNLRLVSEVALERILDAIA
NEQPEMVIVDSIQTVYSSDYQSSAGTITQIRECAASLIRAAKEQNFILLIIGHITKEGSLAGPKALEHMVDTVIQFEGEN
YQRYRIVRSVKNRFGPTNEIGVFKMEEDGLTEVSNPSEFFISDRRTDVPGTAVLAGIEGSRALMVEVQALVSRTGYSMPQ
RISTGFDLKRIAIILAVLEKRLQFQTAGQDVFVKIAGGLKLVEPAADLAIAAAVASGLQDKPCNPTACCCGEIGLSGELR
AISDGERRIREAVHLGFKSIVLPESNTRELKASIKKLPIRIHGCRTLHEALEAMGV
>Mature_455_residues
AKSTVRYICSACGAVSLKYQGRCFECQSWGTLVETHAEEPDAKTRKKRPAGSIPEVQNLDDTPPEGFHRLMTGIGELDRV
LGGGLMEASAILVGGEPGIGKSTLMIQLVPRLAGKKVLYVAGEESPNQIRERARRLSIKAPNLRLVSEVALERILDAIAN
EQPEMVIVDSIQTVYSSDYQSSAGTITQIRECAASLIRAAKEQNFILLIIGHITKEGSLAGPKALEHMVDTVIQFEGENY
QRYRIVRSVKNRFGPTNEIGVFKMEEDGLTEVSNPSEFFISDRRTDVPGTAVLAGIEGSRALMVEVQALVSRTGYSMPQR
ISTGFDLKRIAIILAVLEKRLQFQTAGQDVFVKIAGGLKLVEPAADLAIAAAVASGLQDKPCNPTACCCGEIGLSGELRA
ISDGERRIREAVHLGFKSIVLPESNTRELKASIKKLPIRIHGCRTLHEALEAMGV

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=460, Percent_Identity=43.0434782608696, Blast_Score=378, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49536; Mature: 49405

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSTVRYICSACGAVSLKYQGRCFECQSWGTLVETHAEEPDAKTRKKRPAGSIPEVQNL
CCCHHHHHHHHHCCCEEEEECCCEEEECCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCC
DDTPPEGFHRLMTGIGELDRVLGGGLMEASAILVGGEPGIGKSTLMIQLVPRLAGKKVLY
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE
VAGEESPNQIRERARRLSIKAPNLRLVSEVALERILDAIANEQPEMVIVDSIQTVYSSDY
EECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHCCC
QSSAGTITQIRECAASLIRAAKEQNFILLIIGHITKEGSLAGPKALEHMVDTVIQFEGEN
CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
YQRYRIVRSVKNRFGPTNEIGVFKMEEDGLTEVSNPSEFFISDRRTDVPGTAVLAGIEGS
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHEECCCCCCCCCCEEEEECCCC
RALMVEVQALVSRTGYSMPQRISTGFDLKRIAIILAVLEKRLQFQTAGQDVFVKIAGGLK
CCHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE
LVEPAADLAIAAAVASGLQDKPCNPTACCCGEIGLSGELRAISDGERRIREAVHLGFKSI
EECHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCHHEE
VLPESNTRELKASIKKLPIRIHGCRTLHEALEAMGV
ECCCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKSTVRYICSACGAVSLKYQGRCFECQSWGTLVETHAEEPDAKTRKKRPAGSIPEVQNL
CCHHHHHHHHHCCCEEEEECCCEEEECCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCC
DDTPPEGFHRLMTGIGELDRVLGGGLMEASAILVGGEPGIGKSTLMIQLVPRLAGKKVLY
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE
VAGEESPNQIRERARRLSIKAPNLRLVSEVALERILDAIANEQPEMVIVDSIQTVYSSDY
EECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHCCC
QSSAGTITQIRECAASLIRAAKEQNFILLIIGHITKEGSLAGPKALEHMVDTVIQFEGEN
CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
YQRYRIVRSVKNRFGPTNEIGVFKMEEDGLTEVSNPSEFFISDRRTDVPGTAVLAGIEGS
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHEECCCCCCCCCCEEEEECCCC
RALMVEVQALVSRTGYSMPQRISTGFDLKRIAIILAVLEKRLQFQTAGQDVFVKIAGGLK
CCHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE
LVEPAADLAIAAAVASGLQDKPCNPTACCCGEIGLSGELRAISDGERRIREAVHLGFKSI
EECHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCHHEE
VLPESNTRELKASIKKLPIRIHGCRTLHEALEAMGV
ECCCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8016066 [H]