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The map label for this gene is ybbM [C]

Identifier: 193212659

GI number: 193212659

Start: 1109191

End: 1109976

Strand: Direct

Name: ybbM [C]

Synonym: Cpar_1004

Alternate gene names: 193212659

Gene position: 1109191-1109976 (Clockwise)

Preceding gene: 193212658

Following gene: 193212660

Centisome position: 48.45

GC content: 58.14

Gene sequence:

>786_bases
ATGAACCCGATCATAGAAATTTCCATCCCGCAGCTGCTGCTTGCGCTGCTCTTTATCCTCGTTGCGCAGGCAACCTCGTT
CATCCACAAGCTCGGGCTGAACAAGGACATCACCATCGGAACGATCCGCACGGTCTCTCAGCTCTTCGTTATGGGGTACG
CCCTGACCTTCATCTTTGGCGCCAACAATCCGTGGCTGACGGTCGGCATCTTTGTTGTCATGGTCTTCTCGGCGGTGTTC
ATCGTGCGGGGGAGGGTGAAGGAGAAGCAGATCGCCTACGAAGTGCCGACTTTTTTGACGATGGTATCAAGCTACTTTCT
GACGGCGCTTTTCGTCTCGTGGCTGGTGATCGGCGTGCACCCGTGGTGGGATCCGCGCTACTTCATTCCGACGGCGGGCA
TGGTGATAGGCAACTCGATGTCCGCGCTCGCGATCTCCATCGAGCGGCTTTTCTCGCAGATGCGCCAGCAGCGCGAGCTG
GTGGAGATGAAACTCTGCCTCGGCGCGAACTTCAAGGAGGCGAGCCGCGACATCTTCAAAGGAGCGGTCAAGGCGGGTAT
GATTCCCTCGATCAACGCCATGATGGGCGTCGGCCTTGTGTTCATCCCCGGCATGATGTCCGGCCAGATCCTCGCAGGGG
CCGACCCACTTATCGCCATCCGCTACCAGATCGTCGTCATGTTCATGCTCGTCGGCTCCACCGCTATGAGCACCATCATC
GTGACGCTCATCATCCGCCGCCGTTGCTTCGGAAAAAGCGAAGAGCTGGTTGTGTCGGCGGACTAA

Upstream 100 bases:

>100_bases
AGGAGGGCAAAACTGTGCTCATCGTTACGCATAGCGACTACCAGCCAGACGTTCCGCAGGCACGAAGCTGCACCTTCCGC
AACGGAAACCTTGAATGCGC

Downstream 100 bases:

>100_bases
ATAGGGGAATGGCGAAGCCGTTGACTTTATAACGTATTACAACGCTCATCAACTTGCATTTTCTGCAGCCTCAACTTCTC
TGTTTGCAGCTCGTTCACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MNPIIEISIPQLLLALLFILVAQATSFIHKLGLNKDITIGTIRTVSQLFVMGYALTFIFGANNPWLTVGIFVVMVFSAVF
IVRGRVKEKQIAYEVPTFLTMVSSYFLTALFVSWLVIGVHPWWDPRYFIPTAGMVIGNSMSALAISIERLFSQMRQQREL
VEMKLCLGANFKEASRDIFKGAVKAGMIPSINAMMGVGLVFIPGMMSGQILAGADPLIAIRYQIVVMFMLVGSTAMSTII
VTLIIRRRCFGKSEELVVSAD

Sequences:

>Translated_261_residues
MNPIIEISIPQLLLALLFILVAQATSFIHKLGLNKDITIGTIRTVSQLFVMGYALTFIFGANNPWLTVGIFVVMVFSAVF
IVRGRVKEKQIAYEVPTFLTMVSSYFLTALFVSWLVIGVHPWWDPRYFIPTAGMVIGNSMSALAISIERLFSQMRQQREL
VEMKLCLGANFKEASRDIFKGAVKAGMIPSINAMMGVGLVFIPGMMSGQILAGADPLIAIRYQIVVMFMLVGSTAMSTII
VTLIIRRRCFGKSEELVVSAD
>Mature_261_residues
MNPIIEISIPQLLLALLFILVAQATSFIHKLGLNKDITIGTIRTVSQLFVMGYALTFIFGANNPWLTVGIFVVMVFSAVF
IVRGRVKEKQIAYEVPTFLTMVSSYFLTALFVSWLVIGVHPWWDPRYFIPTAGMVIGNSMSALAISIERLFSQMRQQREL
VEMKLCLGANFKEASRDIFKGAVKAGMIPSINAMMGVGLVFIPGMMSGQILAGADPLIAIRYQIVVMFMLVGSTAMSTII
VTLIIRRRCFGKSEELVVSAD

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=254, Percent_Identity=33.8582677165354, Blast_Score=143, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 28869; Mature: 28869

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIIEISIPQLLLALLFILVAQATSFIHKLGLNKDITIGTIRTVSQLFVMGYALTFIFG
CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
ANNPWLTVGIFVVMVFSAVFIVRGRVKEKQIAYEVPTFLTMVSSYFLTALFVSWLVIGVH
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PWWDPRYFIPTAGMVIGNSMSALAISIERLFSQMRQQRELVEMKLCLGANFKEASRDIFK
CCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
GAVKAGMIPSINAMMGVGLVFIPGMMSGQILAGADPLIAIRYQIVVMFMLVGSTAMSTII
HHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTLIIRRRCFGKSEELVVSAD
HHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MNPIIEISIPQLLLALLFILVAQATSFIHKLGLNKDITIGTIRTVSQLFVMGYALTFIFG
CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
ANNPWLTVGIFVVMVFSAVFIVRGRVKEKQIAYEVPTFLTMVSSYFLTALFVSWLVIGVH
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PWWDPRYFIPTAGMVIGNSMSALAISIERLFSQMRQQRELVEMKLCLGANFKEASRDIFK
CCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
GAVKAGMIPSINAMMGVGLVFIPGMMSGQILAGADPLIAIRYQIVVMFMLVGSTAMSTII
HHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTLIIRRRCFGKSEELVVSAD
HHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]