| Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
|---|---|
| Accession | NC_011027 |
| Length | 2,289,249 |
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The map label for this gene is kojP [H]
Identifier: 193212525
GI number: 193212525
Start: 943245
End: 945620
Strand: Direct
Name: kojP [H]
Synonym: Cpar_0865
Alternate gene names: 193212525
Gene position: 943245-945620 (Clockwise)
Preceding gene: 193212521
Following gene: 193212526
Centisome position: 41.2
GC content: 57.15
Gene sequence:
>2376_bases ATGACCGGGCAAGCTTCATCAGGCGTTGAGCGTCTTGTTGCTGAAACGGACGCTCTGTTCGAACTTTCATCCAAAGAGTG GCTCCTGAGAAAAAAGGGGTTCAGGAAAGGTTCGAAGTCGATTCAGATCAACGAGACCTTGTTGACGGTCGGCAACGGTT ACCTCAACATCAGGGGCAGCCTCGAAGAGCTTCCGCCCGGTCACTGTGGCGGCATGTACCTGTCCGGGATTTACGACAAA TCGGAAGCCGATGTCGAAGAGCTGGTCAAGTGCCCGATGTGGACCGACGTCTCGGTCTGGTATGAGGATGAAAAGTTCTG CCTCTCATGCAGCCGCGCGCTGGAGCATGAGCAGGTGCTCGACATGAAAAAAGGCATCCTGCACCGCCGCACCACCTTCA AAAATTCACACGGAAAAATTCTCACCCTCGAAACCTCGCGGCTCGTGTTCATGCACGACGCTCATCGGGGCTACATGCGG GTGCGGATCACGCCGGTAAATTTTTCCGGGCAGATCAGGGTACTTTCGGGGCTGAACGGTGAGGTGTTCAATCGCGGATT TTTTCCGCACGAACAGTACAAGCACCTCCAGCTCGAAAAGATCGAGCGGGGCCGCAACTTCATGTACCTCGAAATGAAGA CCCGCGAGCGCGGCATCCGCATCGCCGAGGCCGCGTCGTGGAAGATGATGAACGGTCAGGAGCGGAGGCGCCGCTGGGAG CCGAGGATTTACGGTGAGAAGTTTACCAGCGAAATCACCATCGACGCTTCGCAGGGGGAGTCCTACACCTTTGAAAAGCT CGCCGTCGTTATGACCAACCGCGATGTGCCGGTCGATCGTGCGAACAACATGATCCGGGAAGCGATCTGCAACCTCCGCT GCTACGTGCGTACCGGTGCGCCGGTCGAAATCAAACGGCATATCGATGTCTGGCGCAATCTGTGGAGTCGCGCCGACGTT CGGATTGAAGGCGATGATGCCGCCCAGCAGGCGCTTCGCTACAACATCTACCAGCTGCTCATCAACGGCCCGTCAAAGCC CGGCCCTATCGGAGCGAAATTCCTCAGCTCGGAGGGTTACATGGGCCACGTGTTCTGGGACACCGAAATTTTCATTTTGC CCTTCTACATCCACAATTTTCCGTCGATGGCGCGCAACATCTTGATGTACCGTTGCAACACCCTGCCCGGCGCGATCAGG AACGCCGAAAAGTCGGGTTACGATGGCGCGCGCTTCGCCTGGGAGTCGGCCACGACCGGCGAGGATGTGACGCCCCGTTT TGCCTCCAAGCTCGAAAAAACCATCAGGCTGATCTATACCGGCGCCGAGGAGGATCATATCGTGTCCGACGTTATTTACG GCGTGGAGCGCTACTTCCGGGTGACTGGCGACGAGAGTTTCCTCTTGCATTGCGGTCTGGAGATGGTGTTCCTGACGGCG CGGTTCTGGGCGAGCCGGGTGACGAAGGTGGGCGAGCATTATGAAATTCACAAGGTGATCGGGCCGGATGAATTTCACGA GCACGTCAACAACAACGCCTACACCAACTGGCTGGTCAAGTGGCATCTGCGGCTGGCGACCATGCTTTTCAGGCACGTCG GCAAGACGGCTCCGGAGGCGTTGCGAGAGCTTGCCGGAAAGATTTCGCTTGCTGATGATGAACCGGAACACTGGCTCGAC ATCAGCCGTCGCCTCAAGTTCACCCAGGATCCCGAGACAGGGCTGGTCGAGCAGTTCGACGGCTACTTCGACCTCAAAGA TTATGTGATCGGCCATCCCGACCGCTTCGGTCATCCGGTGCTGCCTCCGGGCGTGAACTACCGGAATATCGGGCGCACCC GACTTATCAAACAGGCCGACGTGCTGCTCATGATGCTGCTCTTCCCGCACTGCTTCAGCGTCGAGGAAAAGAAGGTCAAC TACGACTTTTACGAGCCGCGCACGGCGCACAAATCCTCCCTGAGCCACTGCACCTACGCCATGATGGGGCTGGCTGTTTC CGAGCGAGCCAACGCCTATCGCTATTTCATGAAAACTGCCCTGTTCGATCTCGAAAACCTGCACAACAATACCGAACTTG GCATTCATGCGGCCTCGGTCGGCGGAAGCTGGCAGGCGGTCATCCACGGATTCGCGGGCCTGACGCTCAAGTCCGACCGG ATTGTGCTGACGCCGTGGCTGCCAAAAAAATGGAAGCGCCTGTCGTTCAGGGTGCGGTGGCGCGAACGCGATGTTCATCT CGATATCACTCACAGCGAGGTGTCGATAAGGATCGATGCTGTTTCGGATGTGACGCTGCCCTGCACGCTGTACGGCCAGA ATTACAAGATCAGGACAAACAAGCCCTATACCCTTCAATACTGTCCGTCAAAATGA
Upstream 100 bases:
>100_bases GTAAGGCGGGCCATTGAAGTTTGTGTGGTCATGTGCATTGGTAAGGTGTGTTGTGTGGACTTTTCCAGACAGTGGAATTC GTGAGGTATTGGGAGGAATT
Downstream 100 bases:
>100_bases CGAGGAGACCGCTTCCATGAAAAAGCTCAGAATTGCACAGATTTCTCCCCTGATCGAAAGCGTCCCGCCAAAGAAATATG GCGGCACGGAACGGGTGGTC
Product: Kojibiose phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 791; Mature: 790
Protein sequence:
>791_residues MTGQASSGVERLVAETDALFELSSKEWLLRKKGFRKGSKSIQINETLLTVGNGYLNIRGSLEELPPGHCGGMYLSGIYDK SEADVEELVKCPMWTDVSVWYEDEKFCLSCSRALEHEQVLDMKKGILHRRTTFKNSHGKILTLETSRLVFMHDAHRGYMR VRITPVNFSGQIRVLSGLNGEVFNRGFFPHEQYKHLQLEKIERGRNFMYLEMKTRERGIRIAEAASWKMMNGQERRRRWE PRIYGEKFTSEITIDASQGESYTFEKLAVVMTNRDVPVDRANNMIREAICNLRCYVRTGAPVEIKRHIDVWRNLWSRADV RIEGDDAAQQALRYNIYQLLINGPSKPGPIGAKFLSSEGYMGHVFWDTEIFILPFYIHNFPSMARNILMYRCNTLPGAIR NAEKSGYDGARFAWESATTGEDVTPRFASKLEKTIRLIYTGAEEDHIVSDVIYGVERYFRVTGDESFLLHCGLEMVFLTA RFWASRVTKVGEHYEIHKVIGPDEFHEHVNNNAYTNWLVKWHLRLATMLFRHVGKTAPEALRELAGKISLADDEPEHWLD ISRRLKFTQDPETGLVEQFDGYFDLKDYVIGHPDRFGHPVLPPGVNYRNIGRTRLIKQADVLLMMLLFPHCFSVEEKKVN YDFYEPRTAHKSSLSHCTYAMMGLAVSERANAYRYFMKTALFDLENLHNNTELGIHAASVGGSWQAVIHGFAGLTLKSDR IVLTPWLPKKWKRLSFRVRWRERDVHLDITHSEVSIRIDAVSDVTLPCTLYGQNYKIRTNKPYTLQYCPSK
Sequences:
>Translated_791_residues MTGQASSGVERLVAETDALFELSSKEWLLRKKGFRKGSKSIQINETLLTVGNGYLNIRGSLEELPPGHCGGMYLSGIYDK SEADVEELVKCPMWTDVSVWYEDEKFCLSCSRALEHEQVLDMKKGILHRRTTFKNSHGKILTLETSRLVFMHDAHRGYMR VRITPVNFSGQIRVLSGLNGEVFNRGFFPHEQYKHLQLEKIERGRNFMYLEMKTRERGIRIAEAASWKMMNGQERRRRWE PRIYGEKFTSEITIDASQGESYTFEKLAVVMTNRDVPVDRANNMIREAICNLRCYVRTGAPVEIKRHIDVWRNLWSRADV RIEGDDAAQQALRYNIYQLLINGPSKPGPIGAKFLSSEGYMGHVFWDTEIFILPFYIHNFPSMARNILMYRCNTLPGAIR NAEKSGYDGARFAWESATTGEDVTPRFASKLEKTIRLIYTGAEEDHIVSDVIYGVERYFRVTGDESFLLHCGLEMVFLTA RFWASRVTKVGEHYEIHKVIGPDEFHEHVNNNAYTNWLVKWHLRLATMLFRHVGKTAPEALRELAGKISLADDEPEHWLD ISRRLKFTQDPETGLVEQFDGYFDLKDYVIGHPDRFGHPVLPPGVNYRNIGRTRLIKQADVLLMMLLFPHCFSVEEKKVN YDFYEPRTAHKSSLSHCTYAMMGLAVSERANAYRYFMKTALFDLENLHNNTELGIHAASVGGSWQAVIHGFAGLTLKSDR IVLTPWLPKKWKRLSFRVRWRERDVHLDITHSEVSIRIDAVSDVTLPCTLYGQNYKIRTNKPYTLQYCPSK >Mature_790_residues TGQASSGVERLVAETDALFELSSKEWLLRKKGFRKGSKSIQINETLLTVGNGYLNIRGSLEELPPGHCGGMYLSGIYDKS EADVEELVKCPMWTDVSVWYEDEKFCLSCSRALEHEQVLDMKKGILHRRTTFKNSHGKILTLETSRLVFMHDAHRGYMRV RITPVNFSGQIRVLSGLNGEVFNRGFFPHEQYKHLQLEKIERGRNFMYLEMKTRERGIRIAEAASWKMMNGQERRRRWEP RIYGEKFTSEITIDASQGESYTFEKLAVVMTNRDVPVDRANNMIREAICNLRCYVRTGAPVEIKRHIDVWRNLWSRADVR IEGDDAAQQALRYNIYQLLINGPSKPGPIGAKFLSSEGYMGHVFWDTEIFILPFYIHNFPSMARNILMYRCNTLPGAIRN AEKSGYDGARFAWESATTGEDVTPRFASKLEKTIRLIYTGAEEDHIVSDVIYGVERYFRVTGDESFLLHCGLEMVFLTAR FWASRVTKVGEHYEIHKVIGPDEFHEHVNNNAYTNWLVKWHLRLATMLFRHVGKTAPEALRELAGKISLADDEPEHWLDI SRRLKFTQDPETGLVEQFDGYFDLKDYVIGHPDRFGHPVLPPGVNYRNIGRTRLIKQADVLLMMLLFPHCFSVEEKKVNY DFYEPRTAHKSSLSHCTYAMMGLAVSERANAYRYFMKTALFDLENLHNNTELGIHAASVGGSWQAVIHGFAGLTLKSDRI VLTPWLPKKWKRLSFRVRWRERDVHLDITHSEVSIRIDAVSDVTLPCTLYGQNYKIRTNKPYTLQYCPSK
Specific function: Hydrolyzes kojibiose in the presence of an inorganic phosphoric acid to form D-glucose and beta-D-glucose-1-phosphoric acid. Can act with alpha-1,2-oligoglucans, such as selaginose, as substrate, but more slowly. Inactive when dissaccharides with linkages
COG id: COG1554
COG function: function code G; Trehalose and maltose hydrolases (possible phosphorylases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 65 family [H]
Homologues:
Organism=Homo sapiens, GI187829418, Length=478, Percent_Identity=29.0794979079498, Blast_Score=163, Evalue=7e-40, Organism=Escherichia coli, GI1787575, Length=734, Percent_Identity=30.1089918256131, Blast_Score=340, Evalue=3e-94, Organism=Saccharomyces cerevisiae, GI6325283, Length=258, Percent_Identity=29.0697674418605, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24583760, Length=466, Percent_Identity=25.7510729613734, Blast_Score=119, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR011013 - InterPro: IPR005194 - InterPro: IPR005195 - InterPro: IPR005196 - InterPro: IPR017045 [H]
Pfam domain/function: PF03633 Glyco_hydro_65C; PF03632 Glyco_hydro_65m; PF03636 Glyco_hydro_65N [H]
EC number: =2.4.1.230 [H]
Molecular weight: Translated: 91348; Mature: 91216
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGQASSGVERLVAETDALFELSSKEWLLRKKGFRKGSKSIQINETLLTVGNGYLNIRGS CCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEECC LEELPPGHCGGMYLSGIYDKSEADVEELVKCPMWTDVSVWYEDEKFCLSCSRALEHEQVL HHHCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH DMKKGILHRRTTFKNSHGKILTLETSRLVFMHDAHRGYMRVRITPVNFSGQIRVLSGLNG HHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCEEEEEEEEECCCCCEEEEECCCC EVFNRGFFPHEQYKHLQLEKIERGRNFMYLEMKTRERGIRIAEAASWKMMNGQERRRRWE HHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCEECCCCHHHHHCCC PRIYGEKFTSEITIDASQGESYTFEKLAVVMTNRDVPVDRANNMIREAICNLRCYVRTGA CCCCCCCCCCEEEEECCCCCCEEHEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCC PVEIKRHIDVWRNLWSRADVRIEGDDAAQQALRYNIYQLLINGPSKPGPIGAKFLSSEGY CEEEHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHEEEEECCCCCCCCCCHHEECCCCC MGHVFWDTEIFILPFYIHNFPSMARNILMYRCNTLPGAIRNAEKSGYDGARFAWESATTG EEEEEECCEEEEEEHHHHCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEECCCCCC EDVTPRFASKLEKTIRLIYTGAEEDHIVSDVIYGVERYFRVTGDESFLLHCGLEMVFLTA CCCCHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHEEECCCCCEEEECCHHHHHHHH RFWASRVTKVGEHYEIHKVIGPDEFHEHVNNNAYTNWLVKWHLRLATMLFRHVGKTAPEA HHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHH LRELAGKISLADDEPEHWLDISRRLKFTQDPETGLVEQFDGYFDLKDYVIGHPDRFGHPV HHHHHCCEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHEECCCCCCCCCC LPPGVNYRNIGRTRLIKQADVLLMMLLFPHCFSVEEKKVNYDFYEPRTAHKSSLSHCTYA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH MMGLAVSERANAYRYFMKTALFDLENLHNNTELGIHAASVGGSWQAVIHGFAGLTLKSDR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCEEECCC IVLTPWLPKKWKRLSFRVRWRERDVHLDITHSEVSIRIDAVSDVTLPCTLYGQNYKIRTN EEEECCCCCHHHEEEEEEEEECCCEEEEEEECEEEEEEEEECCCEEEEEEECCCEEEECC KPYTLQYCPSK CCEEEEECCCC >Mature Secondary Structure TGQASSGVERLVAETDALFELSSKEWLLRKKGFRKGSKSIQINETLLTVGNGYLNIRGS CCCCHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEECC LEELPPGHCGGMYLSGIYDKSEADVEELVKCPMWTDVSVWYEDEKFCLSCSRALEHEQVL HHHCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH DMKKGILHRRTTFKNSHGKILTLETSRLVFMHDAHRGYMRVRITPVNFSGQIRVLSGLNG HHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCEEEEEEEEECCCCCEEEEECCCC EVFNRGFFPHEQYKHLQLEKIERGRNFMYLEMKTRERGIRIAEAASWKMMNGQERRRRWE HHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCEECCCCHHHHHCCC PRIYGEKFTSEITIDASQGESYTFEKLAVVMTNRDVPVDRANNMIREAICNLRCYVRTGA CCCCCCCCCCEEEEECCCCCCEEHEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCC PVEIKRHIDVWRNLWSRADVRIEGDDAAQQALRYNIYQLLINGPSKPGPIGAKFLSSEGY CEEEHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHEEEEECCCCCCCCCCHHEECCCCC MGHVFWDTEIFILPFYIHNFPSMARNILMYRCNTLPGAIRNAEKSGYDGARFAWESATTG EEEEEECCEEEEEEHHHHCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEECCCCCC EDVTPRFASKLEKTIRLIYTGAEEDHIVSDVIYGVERYFRVTGDESFLLHCGLEMVFLTA CCCCHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHEEECCCCCEEEECCHHHHHHHH RFWASRVTKVGEHYEIHKVIGPDEFHEHVNNNAYTNWLVKWHLRLATMLFRHVGKTAPEA HHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHH LRELAGKISLADDEPEHWLDISRRLKFTQDPETGLVEQFDGYFDLKDYVIGHPDRFGHPV HHHHHCCEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHEECCCCCCCCCC LPPGVNYRNIGRTRLIKQADVLLMMLLFPHCFSVEEKKVNYDFYEPRTAHKSSLSHCTYA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH MMGLAVSERANAYRYFMKTALFDLENLHNNTELGIHAASVGGSWQAVIHGFAGLTLKSDR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCEEECCC IVLTPWLPKKWKRLSFRVRWRERDVHLDITHSEVSIRIDAVSDVTLPCTLYGQNYKIRTN EEEECCCCCHHHEEEEEEEEECCCEEEEEEECEEEEEEEEECCCEEEEEEECCCEEEECC KPYTLQYCPSK CCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA