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The map label for this gene is ybbK [C]

Identifier: 193212487

GI number: 193212487

Start: 894676

End: 895425

Strand: Direct

Name: ybbK [C]

Synonym: Cpar_0824

Alternate gene names: 193212487

Gene position: 894676-895425 (Clockwise)

Preceding gene: 193212486

Following gene: 193212488

Centisome position: 39.08

GC content: 56.0

Gene sequence:

>750_bases
ATGATTTCAGTTAATATTGTGGTATTGCTGATGCTTGTGGCGGCGTTTTTCGTCTCCGCGGTCAAGATTTTGCCAGAGTA
CGAGCGGGGAGTGGTGTTCCGGCTTGGCCGGATTATCGGAGCCAAGGGCCCGGGCCTGATCATCCTGATTCCTTACATCG
ATCGTATGATTCGGGTTGACTTGCGAACCGTGACTCTCGACGTTCCTCCGCAGGACATCATCACCCGCGACAACGTGTCG
GTGAAGGTGAGCGCCGTGGTCTATTTCCGGGTGATCGACTCGATCAAGGCGATTATCGATGTGGAAGATTTCCATTTCGC
TACATCTCAGCTCGCCCAGACCACGCTCCGCAGCGTTTGCGGACAGGGGGAGATGGACAACCTTCTTGCTGAGCGCGACG
AAATCAACGAGCGCATTCAGACGATTCTCGACAAGGATACCGAACCGTGGGGCGTGAAGGTCAGCAAGGTCGAGGTCAAG
GAGATCGACTTGCCTGACGAGATGCGTCGTGCGATGGCAAAGCAGGCTGAGGCCGAGCGCGAGCGCCGTTCAAAGATCAT
CAACGCAGAGGGCGAGTTCCAGGCTGCGCAGCGTTTGTCGGAAGCGGCGGCGATCATCTCGCAGAATCCGGCGGCTCTGC
AGTTGCGTTATCTCCAGACCTTGCAGGACATCGCCGTCGAGAACAATTCGACCACGATTTTCCCGGTTCCGGTCGATCTG
TTCAGGACCTTTTTCGAGAAAAAAGCCTGA

Upstream 100 bases:

>100_bases
CAACGGCTGCTGTGCCGATTCCCGCTGGAGTGCAGGTAACGGTGACAGGGATCGACGGAATGAGGCTTAACGTTAAACCA
AACCCAACCAAGGAGGAGTG

Downstream 100 bases:

>100_bases
CCCGGTTTTTCAGGAATATTTCAAATGATCAAACAATACGGCCATGATTACCATCAAGTCGATTCTCTGCCCGATGGATT
TTTCGGAAGCTTCGAAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MISVNIVVLLMLVAAFFVSAVKILPEYERGVVFRLGRIIGAKGPGLIILIPYIDRMIRVDLRTVTLDVPPQDIITRDNVS
VKVSAVVYFRVIDSIKAIIDVEDFHFATSQLAQTTLRSVCGQGEMDNLLAERDEINERIQTILDKDTEPWGVKVSKVEVK
EIDLPDEMRRAMAKQAEAERERRSKIINAEGEFQAAQRLSEAAAIISQNPAALQLRYLQTLQDIAVENNSTTIFPVPVDL
FRTFFEKKA

Sequences:

>Translated_249_residues
MISVNIVVLLMLVAAFFVSAVKILPEYERGVVFRLGRIIGAKGPGLIILIPYIDRMIRVDLRTVTLDVPPQDIITRDNVS
VKVSAVVYFRVIDSIKAIIDVEDFHFATSQLAQTTLRSVCGQGEMDNLLAERDEINERIQTILDKDTEPWGVKVSKVEVK
EIDLPDEMRRAMAKQAEAERERRSKIINAEGEFQAAQRLSEAAAIISQNPAALQLRYLQTLQDIAVENNSTTIFPVPVDL
FRTFFEKKA
>Mature_249_residues
MISVNIVVLLMLVAAFFVSAVKILPEYERGVVFRLGRIIGAKGPGLIILIPYIDRMIRVDLRTVTLDVPPQDIITRDNVS
VKVSAVVYFRVIDSIKAIIDVEDFHFATSQLAQTTLRSVCGQGEMDNLLAERDEINERIQTILDKDTEPWGVKVSKVEVK
EIDLPDEMRRAMAKQAEAERERRSKIINAEGEFQAAQRLSEAAAIISQNPAALQLRYLQTLQDIAVENNSTTIFPVPVDL
FRTFFEKKA

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=238, Percent_Identity=49.1596638655462, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI21686995, Length=238, Percent_Identity=49.1596638655462, Blast_Score=232, Evalue=2e-61,
Organism=Homo sapiens, GI38016911, Length=245, Percent_Identity=47.7551020408163, Blast_Score=224, Evalue=6e-59,
Organism=Homo sapiens, GI7657615, Length=244, Percent_Identity=36.0655737704918, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI7305503, Length=183, Percent_Identity=36.6120218579235, Blast_Score=130, Evalue=8e-31,
Organism=Homo sapiens, GI20149563, Length=159, Percent_Identity=34.5911949685535, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI38016907, Length=64, Percent_Identity=53.125, Blast_Score=76, Evalue=3e-14,
Organism=Escherichia coli, GI1786697, Length=189, Percent_Identity=38.0952380952381, Blast_Score=144, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI71987612, Length=250, Percent_Identity=49.2, Blast_Score=228, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI25153583, Length=250, Percent_Identity=49.2, Blast_Score=228, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI71987621, Length=250, Percent_Identity=49.2, Blast_Score=227, Evalue=4e-60,
Organism=Caenorhabditis elegans, GI17570161, Length=230, Percent_Identity=51.7391304347826, Blast_Score=223, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI193210507, Length=230, Percent_Identity=51.7391304347826, Blast_Score=222, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI17569499, Length=251, Percent_Identity=46.6135458167331, Blast_Score=219, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI17570459, Length=251, Percent_Identity=44.6215139442231, Blast_Score=217, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI17569493, Length=241, Percent_Identity=44.8132780082988, Blast_Score=213, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI193209764, Length=241, Percent_Identity=44.8132780082988, Blast_Score=213, Evalue=7e-56,
Organism=Caenorhabditis elegans, GI71989948, Length=234, Percent_Identity=47.8632478632479, Blast_Score=210, Evalue=6e-55,
Organism=Caenorhabditis elegans, GI17569497, Length=239, Percent_Identity=43.0962343096234, Blast_Score=207, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI32566490, Length=223, Percent_Identity=48.8789237668161, Blast_Score=204, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=50, Blast_Score=166, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI32564147, Length=180, Percent_Identity=37.7777777777778, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI71989963, Length=122, Percent_Identity=51.6393442622951, Blast_Score=128, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17542664, Length=168, Percent_Identity=29.7619047619048, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI45556022, Length=251, Percent_Identity=49.003984063745, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI18860517, Length=250, Percent_Identity=48.4, Blast_Score=225, Evalue=2e-59,
Organism=Drosophila melanogaster, GI24657857, Length=248, Percent_Identity=49.5967741935484, Blast_Score=224, Evalue=3e-59,
Organism=Drosophila melanogaster, GI62484448, Length=243, Percent_Identity=50.6172839506173, Blast_Score=224, Evalue=5e-59,
Organism=Drosophila melanogaster, GI281365664, Length=243, Percent_Identity=50.6172839506173, Blast_Score=224, Evalue=5e-59,
Organism=Drosophila melanogaster, GI62484274, Length=243, Percent_Identity=50.6172839506173, Blast_Score=223, Evalue=9e-59,
Organism=Drosophila melanogaster, GI28573263, Length=243, Percent_Identity=41.9753086419753, Blast_Score=204, Evalue=4e-53,
Organism=Drosophila melanogaster, GI21356845, Length=245, Percent_Identity=41.2244897959184, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI281361631, Length=247, Percent_Identity=40.080971659919, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI281361633, Length=247, Percent_Identity=40.080971659919, Blast_Score=192, Evalue=1e-49,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=41.0810810810811, Blast_Score=147, Evalue=5e-36,
Organism=Drosophila melanogaster, GI45550506, Length=184, Percent_Identity=40.2173913043478, Blast_Score=137, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28028; Mature: 28028

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVNIVVLLMLVAAFFVSAVKILPEYERGVVFRLGRIIGAKGPGLIILIPYIDRMIRVD
CEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHE
LRTVTLDVPPQDIITRDNVSVKVSAVVYFRVIDSIKAIIDVEDFHFATSQLAQTTLRSVC
EEEEEEECCCHHHEECCCCEEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
GQGEMDNLLAERDEINERIQTILDKDTEPWGVKVSKVEVKEIDLPDEMRRAMAKQAEAER
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHH
ERRSKIINAEGEFQAAQRLSEAAAIISQNPAALQLRYLQTLQDIAVENNSTTIFPVPVDL
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHH
FRTFFEKKA
HHHHHHCCC
>Mature Secondary Structure
MISVNIVVLLMLVAAFFVSAVKILPEYERGVVFRLGRIIGAKGPGLIILIPYIDRMIRVD
CEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHE
LRTVTLDVPPQDIITRDNVSVKVSAVVYFRVIDSIKAIIDVEDFHFATSQLAQTTLRSVC
EEEEEEECCCHHHEECCCCEEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
GQGEMDNLLAERDEINERIQTILDKDTEPWGVKVSKVEVKEIDLPDEMRRAMAKQAEAER
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHH
ERRSKIINAEGEFQAAQRLSEAAAIISQNPAALQLRYLQTLQDIAVENNSTTIFPVPVDL
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHH
FRTFFEKKA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]