Click here to switch to the map view.

The map label for this gene is 193212383

Identifier: 193212383

GI number: 193212383

Start: 767453

End: 767896

Strand: Direct

Name: 193212383

Synonym: Cpar_0717

Alternate gene names: NA

Gene position: 767453-767896 (Clockwise)

Preceding gene: 193212382

Following gene: 193212384

Centisome position: 33.52

GC content: 37.16

Gene sequence:

>444_bases
ATGATTGATGTGAAAAAAATGCCAATTGACTTGATGGATGATATATATAGTCTTGCTTATTGGATGACAAGCTCTGAAAA
ATCTGCGAGTGATCTTTTAAACAGGGTATATCTGAATGTCGATATTGAAAGCTCTGAAAAAGAGGTTATCAAAATGTTCA
GAAACTGTTATTTCGATAGTATTGGAGTTGAACTTATTTCCGGTTTTACGAATAATCTGTACCGAGCAGAAAATAATTTT
ACGCAATCATTTTTGCGATGGTTTGAGGATATAAAGCTCTCGGTTCTGCTGTCTGAGATATCCTGCCTTAAACATCGTGA
TATTTCTGAAATAACAGGAGAGTCTCTCGAAACAATAAGAATGTGGTTATCCTGGGGGCGCAAACAGGTCGGCAATGGCA
ATCTGTTTAATTATTGTCCCTTGTCGAAAGCTGTGGGCTTCTGA

Upstream 100 bases:

>100_bases
AAAGATGGGAAAAAAGGCGAGAACGATAAACGAGCAGATTAGGGGAAGGGAAAGAGAGCTTTATTCTATGTATAGCATAA
CGTTAGCCGATGGAGGAACC

Downstream 100 bases:

>100_bases
AACAAAGGTTACTATAGACTTATTTTGTGTGTCTCAGGAATGATGGTGCAATGAATGGCAATTAAAAGAATAAAGGAGAA
TTGTGATGAACACGAAAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MIDVKKMPIDLMDDIYSLAYWMTSSEKSASDLLNRVYLNVDIESSEKEVIKMFRNCYFDSIGVELISGFTNNLYRAENNF
TQSFLRWFEDIKLSVLLSEISCLKHRDISEITGESLETIRMWLSWGRKQVGNGNLFNYCPLSKAVGF

Sequences:

>Translated_147_residues
MIDVKKMPIDLMDDIYSLAYWMTSSEKSASDLLNRVYLNVDIESSEKEVIKMFRNCYFDSIGVELISGFTNNLYRAENNF
TQSFLRWFEDIKLSVLLSEISCLKHRDISEITGESLETIRMWLSWGRKQVGNGNLFNYCPLSKAVGF
>Mature_147_residues
MIDVKKMPIDLMDDIYSLAYWMTSSEKSASDLLNRVYLNVDIESSEKEVIKMFRNCYFDSIGVELISGFTNNLYRAENNF
TQSFLRWFEDIKLSVLLSEISCLKHRDISEITGESLETIRMWLSWGRKQVGNGNLFNYCPLSKAVGF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17079; Mature: 17079

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVKKMPIDLMDDIYSLAYWMTSSEKSASDLLNRVYLNVDIESSEKEVIKMFRNCYFDS
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHH
IGVELISGFTNNLYRAENNFTQSFLRWFEDIKLSVLLSEISCLKHRDISEITGESLETIR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MWLSWGRKQVGNGNLFNYCPLSKAVGF
HHHHHHHHHCCCCCCEEECCCHHHCCC
>Mature Secondary Structure
MIDVKKMPIDLMDDIYSLAYWMTSSEKSASDLLNRVYLNVDIESSEKEVIKMFRNCYFDS
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHH
IGVELISGFTNNLYRAENNFTQSFLRWFEDIKLSVLLSEISCLKHRDISEITGESLETIR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MWLSWGRKQVGNGNLFNYCPLSKAVGF
HHHHHHHHHCCCCCCEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA