Click here to switch to the map view.

The map label for this gene is 193212367

Identifier: 193212367

GI number: 193212367

Start: 750810

End: 752384

Strand: Direct

Name: 193212367

Synonym: Cpar_0700

Alternate gene names: NA

Gene position: 750810-752384 (Clockwise)

Preceding gene: 193212366

Following gene: 193212370

Centisome position: 32.8

GC content: 55.37

Gene sequence:

>1575_bases
ATGGGGATCGTAATAAATCTGTTTCTCATTATTGCGGCATCCGTGATCTTTTTTGCGGTCGGTTTCTACATCGGCCGGTT
CTTTCTTGAGCGTATCGGTACTACTAAAGTTCTCGAAGCTGAGGAGCGTGCCGTGCAGGTTGTTCAGGAGGCCCAGAAAG
AGGCCAATGAATACAAGGATCTGAAGGTCAACGAAGTCAACCAGGAGTGGAAAAAGCGCAAGCGCGAGTTCGATAGCGAG
GTGACGATCAAGAACAACAAGTTCGCTCAGATGCAGAAGCAGATTCGCCAGAAAGAGTCGTCGCTGAACAACCAGCAGCG
GGATGTGCGTGAAACTGAAAAGAAACTTCAGGAGCAGAAAGCCGAGCTGAAACACCTGACTGAAACGGTGCAGGGCCGCT
CCGAGGAGCTTGAAAAGATCATCTTCGAACAGAACCAGCGCCTCGAAAGCATTTCGAACCTGACTGCCGAAGAGGCCCGT
CAGATGCTGATTGACAACATGGTTTCGAAGGCCAGGGAAGAGGCGACCGAAACCATTCACCAGATTCACGAAGAGGCTAC
GCAGAAAGCTGACCGGGCTGCCGAAAAGATTCTGCTGACGGCCATTCAGCGCATCTCTTTCGAGCAGGCTACCGAGAACG
CTCTTTCGGTGGTGCACATCCAGAGCGACGAGCTCAAAGGTCGTATCATCGGTCGCGAAGGGCGTAACATCAAGGCCTTT
GAGAATGCAACCGGCGTTGACATCATTGTTGACGATACTCCGGAAGTGGTTATTCTTTCTTGCTTCGATCCGCTGCGTCG
CGAAATGGCCAAGCTGACCCTGCAGAAGCTGCTCGTCGACGGCATCATCCATCCGGTCGCGATCGAGAAGGCCTATCAGG
ACGCCAAGAAAGAGATCGACGACGTCATCATGTCTTCCGGCGAAGAGGTGCTCTCGTCGCTGCAGATTCCCAACATGCCG
GCCGAACTTGTTGCCCTGATCGGCAAGATGAAATTCCACACGGTTTATGGCCAGAATCTGCTCCTTCACAGCCGCGAAGT
CGCTATGCTGGCGGGGCTCATGGCCGCCGAGCTGAAGCTCGACGCCAAGCAGGCCAAGCGTGCCGGCCTGTTGCACGACA
TCGGTCTTGTGCTTCCCGAAACCGAGCTGCCGCATGCGCTGGCAGGAATGGAGTTCCTCAGGAAATTCAACGAGTCGCCG
GTGGTGCTCAATGCGATTGGCGCTCATCATGGTGAAGTCGGTAAAGAGTCGCCCATCGCCGATCTGGTCGATGCCGCCAA
CGTTATTTCGCTCTCCCGCCCTGGTGCGCGTGGAGCCGTGACCGCCGAAGGCAACGTCAAGCGCCTCGAAAGCCTTGAAG
AGATCGCCAAAGGCTTCCCCGGCGTCATCAAGACCTACGCTTTGCAGGCTGGTCGCGAGATCCGGGTGATTGTCGAAGGT
GACAACGTCAGCGACTCGCAGGCCGATGTGCTCGCGCACGACATCGCCAACAAGATCGAGTCCGAAGCACAGTATCCTGG
CCAGATCAAGGTGACCATTCTTCGCGAAAAACGCTCGGTTGCCTTCGCGAAGTAA

Upstream 100 bases:

>100_bases
TACGGGTTCTTGAATCTTACACATCTCTTAGGGTGCGGGTTTTTTTTGTTCAATTTTGAAGGATCGGCCCTCTCTGGCCG
GTTAAAAGGAGGTTTTTTTA

Downstream 100 bases:

>100_bases
ACGATTGCTACTGGCTGAAAATCAAAAGGCGGGATGTTCTCCCGCCTTTTTTCGTTTGTCGCCGTGGCGCTATTTTATAG
CGACTCCTTGGTCGAGGGAA

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 523

Protein sequence:

>524_residues
MGIVINLFLIIAASVIFFAVGFYIGRFFLERIGTTKVLEAEERAVQVVQEAQKEANEYKDLKVNEVNQEWKKRKREFDSE
VTIKNNKFAQMQKQIRQKESSLNNQQRDVRETEKKLQEQKAELKHLTETVQGRSEELEKIIFEQNQRLESISNLTAEEAR
QMLIDNMVSKAREEATETIHQIHEEATQKADRAAEKILLTAIQRISFEQATENALSVVHIQSDELKGRIIGREGRNIKAF
ENATGVDIIVDDTPEVVILSCFDPLRREMAKLTLQKLLVDGIIHPVAIEKAYQDAKKEIDDVIMSSGEEVLSSLQIPNMP
AELVALIGKMKFHTVYGQNLLLHSREVAMLAGLMAAELKLDAKQAKRAGLLHDIGLVLPETELPHALAGMEFLRKFNESP
VVLNAIGAHHGEVGKESPIADLVDAANVISLSRPGARGAVTAEGNVKRLESLEEIAKGFPGVIKTYALQAGREIRVIVEG
DNVSDSQADVLAHDIANKIESEAQYPGQIKVTILREKRSVAFAK

Sequences:

>Translated_524_residues
MGIVINLFLIIAASVIFFAVGFYIGRFFLERIGTTKVLEAEERAVQVVQEAQKEANEYKDLKVNEVNQEWKKRKREFDSE
VTIKNNKFAQMQKQIRQKESSLNNQQRDVRETEKKLQEQKAELKHLTETVQGRSEELEKIIFEQNQRLESISNLTAEEAR
QMLIDNMVSKAREEATETIHQIHEEATQKADRAAEKILLTAIQRISFEQATENALSVVHIQSDELKGRIIGREGRNIKAF
ENATGVDIIVDDTPEVVILSCFDPLRREMAKLTLQKLLVDGIIHPVAIEKAYQDAKKEIDDVIMSSGEEVLSSLQIPNMP
AELVALIGKMKFHTVYGQNLLLHSREVAMLAGLMAAELKLDAKQAKRAGLLHDIGLVLPETELPHALAGMEFLRKFNESP
VVLNAIGAHHGEVGKESPIADLVDAANVISLSRPGARGAVTAEGNVKRLESLEEIAKGFPGVIKTYALQAGREIRVIVEG
DNVSDSQADVLAHDIANKIESEAQYPGQIKVTILREKRSVAFAK
>Mature_523_residues
GIVINLFLIIAASVIFFAVGFYIGRFFLERIGTTKVLEAEERAVQVVQEAQKEANEYKDLKVNEVNQEWKKRKREFDSEV
TIKNNKFAQMQKQIRQKESSLNNQQRDVRETEKKLQEQKAELKHLTETVQGRSEELEKIIFEQNQRLESISNLTAEEARQ
MLIDNMVSKAREEATETIHQIHEEATQKADRAAEKILLTAIQRISFEQATENALSVVHIQSDELKGRIIGREGRNIKAFE
NATGVDIIVDDTPEVVILSCFDPLRREMAKLTLQKLLVDGIIHPVAIEKAYQDAKKEIDDVIMSSGEEVLSSLQIPNMPA
ELVALIGKMKFHTVYGQNLLLHSREVAMLAGLMAAELKLDAKQAKRAGLLHDIGLVLPETELPHALAGMEFLRKFNESPV
VLNAIGAHHGEVGKESPIADLVDAANVISLSRPGARGAVTAEGNVKRLESLEEIAKGFPGVIKTYALQAGREIRVIVEGD
NVSDSQADVLAHDIANKIESEAQYPGQIKVTILREKRSVAFAK

Specific function: Catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'- terminal of RNA [H]

COG id: COG1418

COG function: function code R; Predicted HD superfamily hydrolase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017705
- InterPro:   IPR022711
- InterPro:   IPR004087
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR003607
- InterPro:   IPR006675 [H]

Pfam domain/function: PF12072 DUF3552; PF00013 KH_1 [H]

EC number: =3.1.4.16 [H]

Molecular weight: Translated: 58514; Mature: 58383

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIVINLFLIIAASVIFFAVGFYIGRFFLERIGTTKVLEAEERAVQVVQEAQKEANEYKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LKVNEVNQEWKKRKREFDSEVTIKNNKFAQMQKQIRQKESSLNNQQRDVRETEKKLQEQK
CCHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AELKHLTETVQGRSEELEKIIFEQNQRLESISNLTAEEARQMLIDNMVSKAREEATETIH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
QIHEEATQKADRAAEKILLTAIQRISFEQATENALSVVHIQSDELKGRIIGREGRNIKAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCEEECCCCCCEEEE
ENATGVDIIVDDTPEVVILSCFDPLRREMAKLTLQKLLVDGIIHPVAIEKAYQDAKKEID
CCCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVIMSSGEEVLSSLQIPNMPAELVALIGKMKFHTVYGQNLLLHSREVAMLAGLMAAELKL
HHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DAKQAKRAGLLHDIGLVLPETELPHALAGMEFLRKFNESPVVLNAIGAHHGEVGKESPIA
HHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHH
DLVDAANVISLSRPGARGAVTAEGNVKRLESLEEIAKGFPGVIKTYALQAGREIRVIVEG
HHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEC
DNVSDSQADVLAHDIANKIESEAQYPGQIKVTILREKRSVAFAK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure 
GIVINLFLIIAASVIFFAVGFYIGRFFLERIGTTKVLEAEERAVQVVQEAQKEANEYKD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LKVNEVNQEWKKRKREFDSEVTIKNNKFAQMQKQIRQKESSLNNQQRDVRETEKKLQEQK
CCHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AELKHLTETVQGRSEELEKIIFEQNQRLESISNLTAEEARQMLIDNMVSKAREEATETIH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
QIHEEATQKADRAAEKILLTAIQRISFEQATENALSVVHIQSDELKGRIIGREGRNIKAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCEEECCCCCCEEEE
ENATGVDIIVDDTPEVVILSCFDPLRREMAKLTLQKLLVDGIIHPVAIEKAYQDAKKEID
CCCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVIMSSGEEVLSSLQIPNMPAELVALIGKMKFHTVYGQNLLLHSREVAMLAGLMAAELKL
HHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DAKQAKRAGLLHDIGLVLPETELPHALAGMEFLRKFNESPVVLNAIGAHHGEVGKESPIA
HHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHH
DLVDAANVISLSRPGARGAVTAEGNVKRLESLEEIAKGFPGVIKTYALQAGREIRVIVEG
HHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEC
DNVSDSQADVLAHDIANKIESEAQYPGQIKVTILREKRSVAFAK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]