Click here to switch to the map view.

The map label for this gene is 193212361

Identifier: 193212361

GI number: 193212361

Start: 741006

End: 742157

Strand: Direct

Name: 193212361

Synonym: Cpar_0694

Alternate gene names: NA

Gene position: 741006-742157 (Clockwise)

Preceding gene: 193212360

Following gene: 193212362

Centisome position: 32.37

GC content: 59.9

Gene sequence:

>1152_bases
ATGCAGTTAAAAAAATTTCAGCCCTATATCATTGCGGTGCTTATCATAGCTGCCGGTCTTCTGATTGGCAGGCTGCTCAG
TACCCATAAGGATACCCAGGAAGAGGCGGTTGCGAAAAAGGAATCAAGGCCGGTCAAGGTGCGGGTGATCGAAAATGGAA
CCGTGTTCCGGAAGGTTGCCCTGAGCGGCAAGCTCGAAGCGGTTCGCAAGATCGAATTGTACGCAGAGGTTTCAGGGGTT
TTTGTCGAGACCTCGCATCCGTTCAGGGCGGGCAACGCCTTTAAAAAGGGTCAGGTGCTCGTCAGGATCGATGACGAAGT
CTATCGCAGCACGGTGCTGGCTGAACGCAGCGGTTTGCTCAACGCTCTGACGCTGCTGCTTCCCGACCTGACCATCGATT
TTCCCGACCATGTCGCGCCGTGGCAAGCCTATGTGCGCAACTTCCGCATCGACGCGCCGTTGAAGCCGCTGCCGAAACCC
GCGACCGACCGGATTCGCAACTATCTCGCCGCCCGCAACATCTACACCCGCTACTACTCGGTGCGGAGCATGGAGGAGAC
GCTCGGCAAATACCGCATCACGGCGCCCTTTGACGGCGTGGTGACGGTCTCGGATCTCAATCCCGGAATGCTCGTGCGGA
CGGGGCAGAAGATCGGCGAATTCTCGGCGGGCGGTCGCTACGAACTCGAAGCCTCCATCGGCGTCAAGGACGCGCCGTTC
GTCAAAAAAGGGGAGCAGATCGAGCTGCACTCCGACGACTTCACTGGCACGGTGCGGGGCGTGGTGTCGCGGGTCAACAC
GGCCATCGACGAGAGCACGCAGACGGTCAAGGTCTATATCGTCGCCGAGGATCCGCGGCTGAAGGACGGCATGTATCTTT
CGGGCGACCTCGAAGTTCCGGTCGATCAGGCGGTCACGGTGTCGCGCAACCTGCTCGGCGCTGACAAAAAGCTGTACGCT
CTGCGCGATTCGGTCATCGTCGGAGTTCCCGTCGAAACCGTGGCGCTCGACGGGCGCACGGCGGTGCTCCGGGGCTTGAA
GGACGGCACGAAGATCATCGCCGAGCCGGTGGAGGGGATGTTCGCGGGCATGGTGGTCGATCCTTCGCAGGTCGTCGTGA
CGGGTGAGAACAATCAGGAATCGGGAAAGTAA

Upstream 100 bases:

>100_bases
CTACTGTCTTCTCTATTTGTTATGTTTCGTGACATTATGTAGTAATCAGGGGCTCTTATCAGCAAATTAATGCGCCCTAA
TGACGAGACAACAGTAACAG

Downstream 100 bases:

>100_bases
GGGCGCTGCTGTGAAAGGAATTATCAGATATTTCGTCAGGTATCCGGTTCTGGGCAACGCGATTTTCCTCGCGATTTTTC
TGTTCGGCTTTCTGGCCTTC

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: Secretion Protein HlyD; Efflux Transporter RND Family MFP Subunit; HlyD Family Secretion Protein

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MQLKKFQPYIIAVLIIAAGLLIGRLLSTHKDTQEEAVAKKESRPVKVRVIENGTVFRKVALSGKLEAVRKIELYAEVSGV
FVETSHPFRAGNAFKKGQVLVRIDDEVYRSTVLAERSGLLNALTLLLPDLTIDFPDHVAPWQAYVRNFRIDAPLKPLPKP
ATDRIRNYLAARNIYTRYYSVRSMEETLGKYRITAPFDGVVTVSDLNPGMLVRTGQKIGEFSAGGRYELEASIGVKDAPF
VKKGEQIELHSDDFTGTVRGVVSRVNTAIDESTQTVKVYIVAEDPRLKDGMYLSGDLEVPVDQAVTVSRNLLGADKKLYA
LRDSVIVGVPVETVALDGRTAVLRGLKDGTKIIAEPVEGMFAGMVVDPSQVVVTGENNQESGK

Sequences:

>Translated_383_residues
MQLKKFQPYIIAVLIIAAGLLIGRLLSTHKDTQEEAVAKKESRPVKVRVIENGTVFRKVALSGKLEAVRKIELYAEVSGV
FVETSHPFRAGNAFKKGQVLVRIDDEVYRSTVLAERSGLLNALTLLLPDLTIDFPDHVAPWQAYVRNFRIDAPLKPLPKP
ATDRIRNYLAARNIYTRYYSVRSMEETLGKYRITAPFDGVVTVSDLNPGMLVRTGQKIGEFSAGGRYELEASIGVKDAPF
VKKGEQIELHSDDFTGTVRGVVSRVNTAIDESTQTVKVYIVAEDPRLKDGMYLSGDLEVPVDQAVTVSRNLLGADKKLYA
LRDSVIVGVPVETVALDGRTAVLRGLKDGTKIIAEPVEGMFAGMVVDPSQVVVTGENNQESGK
>Mature_383_residues
MQLKKFQPYIIAVLIIAAGLLIGRLLSTHKDTQEEAVAKKESRPVKVRVIENGTVFRKVALSGKLEAVRKIELYAEVSGV
FVETSHPFRAGNAFKKGQVLVRIDDEVYRSTVLAERSGLLNALTLLLPDLTIDFPDHVAPWQAYVRNFRIDAPLKPLPKP
ATDRIRNYLAARNIYTRYYSVRSMEETLGKYRITAPFDGVVTVSDLNPGMLVRTGQKIGEFSAGGRYELEASIGVKDAPF
VKKGEQIELHSDDFTGTVRGVVSRVNTAIDESTQTVKVYIVAEDPRLKDGMYLSGDLEVPVDQAVTVSRNLLGADKKLYA
LRDSVIVGVPVETVALDGRTAVLRGLKDGTKIIAEPVEGMFAGMVVDPSQVVVTGENNQESGK

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42072; Mature: 42072

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLKKFQPYIIAVLIIAAGLLIGRLLSTHKDTQEEAVAKKESRPVKVRVIENGTVFRKVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCEEEEEE
LSGKLEAVRKIELYAEVSGVFVETSHPFRAGNAFKKGQVLVRIDDEVYRSTVLAERSGLL
CCCCHHHHHHHHEEEEECEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
NALTLLLPDLTIDFPDHVAPWQAYVRNFRIDAPLKPLPKPATDRIRNYLAARNIYTRYYS
HHHHHHHCCCEECCCCCCCHHHHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VRSMEETLGKYRITAPFDGVVTVSDLNPGMLVRTGQKIGEFSAGGRYELEASIGVKDAPF
HHHHHHHHCCEEEECCCCCEEEEECCCCCEEEECCCHHCCCCCCCEEEEEEECCCCCCCC
VKKGEQIELHSDDFTGTVRGVVSRVNTAIDESTQTVKVYIVAEDPRLKDGMYLSGDLEVP
CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEECCCCCC
VDQAVTVSRNLLGADKKLYALRDSVIVGVPVETVALDGRTAVLRGLKDGTKIIAEPVEGM
CCHHHHHHHHHHCCCCCEEEEECCEEEECCHHEEEECCHHHHHHCCCCCHHHHHHHHHHH
FAGMVVDPSQVVVTGENNQESGK
HCCEEECCCEEEEECCCCCCCCC
>Mature Secondary Structure
MQLKKFQPYIIAVLIIAAGLLIGRLLSTHKDTQEEAVAKKESRPVKVRVIENGTVFRKVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCEEEEEE
LSGKLEAVRKIELYAEVSGVFVETSHPFRAGNAFKKGQVLVRIDDEVYRSTVLAERSGLL
CCCCHHHHHHHHEEEEECEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
NALTLLLPDLTIDFPDHVAPWQAYVRNFRIDAPLKPLPKPATDRIRNYLAARNIYTRYYS
HHHHHHHCCCEECCCCCCCHHHHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VRSMEETLGKYRITAPFDGVVTVSDLNPGMLVRTGQKIGEFSAGGRYELEASIGVKDAPF
HHHHHHHHCCEEEECCCCCEEEEECCCCCEEEECCCHHCCCCCCCEEEEEEECCCCCCCC
VKKGEQIELHSDDFTGTVRGVVSRVNTAIDESTQTVKVYIVAEDPRLKDGMYLSGDLEVP
CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEECCCCCC
VDQAVTVSRNLLGADKKLYALRDSVIVGVPVETVALDGRTAVLRGLKDGTKIIAEPVEGM
CCHHHHHHHHHHCCCCCEEEEECCEEEECCHHEEEECCHHHHHHCCCCCHHHHHHHHHHH
FAGMVVDPSQVVVTGENNQESGK
HCCEEECCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA