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The map label for this gene is cspA [H]

Identifier: 193212293

GI number: 193212293

Start: 670232

End: 670498

Strand: Direct

Name: cspA [H]

Synonym: Cpar_0626

Alternate gene names: 193212293

Gene position: 670232-670498 (Clockwise)

Preceding gene: 193212289

Following gene: 193212303

Centisome position: 29.28

GC content: 42.7

Gene sequence:

>267_bases
ATGGCTAAAAGTAAAGTTAAGTGGTTTGATGGCAAAAAAGGGTACGGTTTTATCCTGAATCCGGATGGGGGAGAAGATAT
TTTTGTCCACTTTTCAGCCATCATTTCCGATCAGAGTTTTAAAGTTTTGAATCAGGACTCTGAAGTCGAGTATGAACTTG
ACAAAACGCAGAAAGGTCTTCAGGCTAAGAGTGTCCGTGAACTTTCATCTCCGGACATGACCGTCACTCCGCTGAACCCC
GCTGTAAACGAGGTTCAATCGAATTAA

Upstream 100 bases:

>100_bases
AGTAAAATAGACGGGAGTTTGTGCGGGTATTGCGCTAATTGACGAAATATTCTATATTAGTGAGTAAATTCACTGTTAAT
ATTAACCTTAAGGTGTCATC

Downstream 100 bases:

>100_bases
AACTGGTGTCTAACCGAGATCGTTTCAGACAGTTTCCCAGACTGCTTTTCAGGAAATGACTCTCATCTGAGGTATCCGGT
TCACAGCCAGGTTCCCTCTC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MAKSKVKWFDGKKGYGFILNPDGGEDIFVHFSAIISDQSFKVLNQDSEVEYELDKTQKGLQAKSVRELSSPDMTVTPLNP
AVNEVQSN

Sequences:

>Translated_88_residues
MAKSKVKWFDGKKGYGFILNPDGGEDIFVHFSAIISDQSFKVLNQDSEVEYELDKTQKGLQAKSVRELSSPDMTVTPLNP
AVNEVQSN
>Mature_87_residues
AKSKVKWFDGKKGYGFILNPDGGEDIFVHFSAIISDQSFKVLNQDSEVEYELDKTQKGLQAKSVRELSSPDMTVTPLNPA
VNEVQSN

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=63, Percent_Identity=46.031746031746, Blast_Score=64, Evalue=1e-12,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=46.969696969697, Blast_Score=61, Evalue=1e-11,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=46.969696969697, Blast_Score=60, Evalue=2e-11,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=49.2063492063492, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 9794; Mature: 9663

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSKVKWFDGKKGYGFILNPDGGEDIFVHFSAIISDQSFKVLNQDSEVEYELDKTQKGL
CCCCCCEEECCCCCCEEEECCCCCCEEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCC
QAKSVRELSSPDMTVTPLNPAVNEVQSN
CCHHHHHCCCCCEEEEECCCHHHHHCCC
>Mature Secondary Structure 
AKSKVKWFDGKKGYGFILNPDGGEDIFVHFSAIISDQSFKVLNQDSEVEYELDKTQKGL
CCCCCEEECCCCCCEEEECCCCCCEEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCC
QAKSVRELSSPDMTVTPLNPAVNEVQSN
CCHHHHHCCCCCEEEEECCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA