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The map label for this gene is rtcB [C]

Identifier: 193212285

GI number: 193212285

Start: 660969

End: 662366

Strand: Direct

Name: rtcB [C]

Synonym: Cpar_0618

Alternate gene names: 193212285

Gene position: 660969-662366 (Clockwise)

Preceding gene: 193212283

Following gene: 193212288

Centisome position: 28.87

GC content: 61.3

Gene sequence:

>1398_bases
ATGAAACGATCGTCGATCAGGGAAATTGAAGAGCGGCTGTGGGAAATTCCACGTTCGTACCGGAGCGATATGCGGGTTCC
GGCGCGCTTTTACGCTTCCGAGGCGATGCTCGACCAGATTCTTGCCGACCGCTCTCTCGAACAGCTTGTAAATGTGGCGA
CCCTGCCGGGCATCGTCGGCTACGCGCTGGCTATGCCGGACATTCACGAAGGGTATGGCTTTCCGATCGGGGGAGTGGCG
GCGTTCGATCTTGACGAGGGGGTCATTTCGCCGGGCGGTATCGGTTACGACATCAACTGCGGCGTTCGCCTCCTGGCTTC
CAGTGAACGCTTCGAGGAGCTCCGCGACAGCATCGGAGAGCTTGCAAGGGAGATTTACCGGCAGGTTCCTTCCGGCGTTG
GGCATGGCAACCAGATCACCTTTTCATCGAAACAGCTCGATCAGGTGCTTCGCGATGGAGCGCCTCGCATGGTTGAGTTT
GGGTACGGAGAGCCGGAAGACCTCGGCCACATCGAGTCGGGTGGCGTGCTCGATGCGGCTGATGCGTCGAAGGTTTCCGA
GCACGCAAAGCAGCGGGGACGGGATCAGCTCGGCACGATGGGGGCGGGTAACCACTTTGTCGAGATCGACCGGATCGACA
CGATTTACGACTGCGATGCTGCTGGGCGCATGGGGCTTTTCGAGGGGCAGGTGGTCATTCAGCTCCACACCGGCTCACGT
GGACTGGGCCACCAGATTGCCACCGATTTCATCCGCGTCATGAATCGCGCGATGCCAATGTACGGTATCACCGTGCCCGA
CCGCGAACTGTGTTGCGTGCCGTTCCGCTCCGCCGAGGGTCAGGAGTACTTCAGCGCCATGTCTGCTGGAGCAAACTTCG
CGTGGTCGAATCGTCAGCTCATCACATGGGAGATCCGTCAGGCGTGGAAAGCGGTCATCGGCAGTTCGCCATTGCGCGTG
GTCTATGACGTGGCGCACAACATCGCCAAGGTCGAAACCCACGAAATCGATGGCCAAAGCCGCCAGCTTCTCGTGCACCG
CAAGGGGGCGACCCGCGCCTTTCCAGGCCAGCCGGTGATTATTCCCGGCAGCATGGGAACGGCGTCTTTCGTGCTGGAAG
GCGCGCCTGCTTCGATGCGTGAAAGCTTCGGCTCGTCGTGCCACGGCGCCGGGCGGCGGATGTCGAGGAAGAAGGCCAAG
CATCTGGTGCAAGGCGGTCAGCTCAGGCGGGAGCTTGAAGCGATGGGCGTTTCCGTGCAGGCCGGGTCACTGGCGGGCCT
CGCTGAAGAAGCGCCGCGGGCCTACAAGGATATCGACGATGTTGTCAGCACGGTCGTGTCGGCTGGCATCGCCCGTAAGG
TTGCCAAGCTGGTGCCGGTGGGGATTATGAAAGGGTAG

Upstream 100 bases:

>100_bases
GCCTGCCGGATGGCGGCTTTTCACAGGAACGCTTACCCTTGGCTGTTGGTTCAGGTTACTTACTCGTTGTCACGTCAAGA
AAGCCTCAGTGGAGCCGGTG

Downstream 100 bases:

>100_bases
GGTGCAGTTGATAGTTGACAGTTGATAGTTGGCGAAGAAAAAACTTTAAGGGCAGTACGCCCATCATTTCGATGGATGGG
GAGTTACTCCTAACAGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MKRSSIREIEERLWEIPRSYRSDMRVPARFYASEAMLDQILADRSLEQLVNVATLPGIVGYALAMPDIHEGYGFPIGGVA
AFDLDEGVISPGGIGYDINCGVRLLASSERFEELRDSIGELAREIYRQVPSGVGHGNQITFSSKQLDQVLRDGAPRMVEF
GYGEPEDLGHIESGGVLDAADASKVSEHAKQRGRDQLGTMGAGNHFVEIDRIDTIYDCDAAGRMGLFEGQVVIQLHTGSR
GLGHQIATDFIRVMNRAMPMYGITVPDRELCCVPFRSAEGQEYFSAMSAGANFAWSNRQLITWEIRQAWKAVIGSSPLRV
VYDVAHNIAKVETHEIDGQSRQLLVHRKGATRAFPGQPVIIPGSMGTASFVLEGAPASMRESFGSSCHGAGRRMSRKKAK
HLVQGGQLRRELEAMGVSVQAGSLAGLAEEAPRAYKDIDDVVSTVVSAGIARKVAKLVPVGIMKG

Sequences:

>Translated_465_residues
MKRSSIREIEERLWEIPRSYRSDMRVPARFYASEAMLDQILADRSLEQLVNVATLPGIVGYALAMPDIHEGYGFPIGGVA
AFDLDEGVISPGGIGYDINCGVRLLASSERFEELRDSIGELAREIYRQVPSGVGHGNQITFSSKQLDQVLRDGAPRMVEF
GYGEPEDLGHIESGGVLDAADASKVSEHAKQRGRDQLGTMGAGNHFVEIDRIDTIYDCDAAGRMGLFEGQVVIQLHTGSR
GLGHQIATDFIRVMNRAMPMYGITVPDRELCCVPFRSAEGQEYFSAMSAGANFAWSNRQLITWEIRQAWKAVIGSSPLRV
VYDVAHNIAKVETHEIDGQSRQLLVHRKGATRAFPGQPVIIPGSMGTASFVLEGAPASMRESFGSSCHGAGRRMSRKKAK
HLVQGGQLRRELEAMGVSVQAGSLAGLAEEAPRAYKDIDDVVSTVVSAGIARKVAKLVPVGIMKG
>Mature_465_residues
MKRSSIREIEERLWEIPRSYRSDMRVPARFYASEAMLDQILADRSLEQLVNVATLPGIVGYALAMPDIHEGYGFPIGGVA
AFDLDEGVISPGGIGYDINCGVRLLASSERFEELRDSIGELAREIYRQVPSGVGHGNQITFSSKQLDQVLRDGAPRMVEF
GYGEPEDLGHIESGGVLDAADASKVSEHAKQRGRDQLGTMGAGNHFVEIDRIDTIYDCDAAGRMGLFEGQVVIQLHTGSR
GLGHQIATDFIRVMNRAMPMYGITVPDRELCCVPFRSAEGQEYFSAMSAGANFAWSNRQLITWEIRQAWKAVIGSSPLRV
VYDVAHNIAKVETHEIDGQSRQLLVHRKGATRAFPGQPVIIPGSMGTASFVLEGAPASMRESFGSSCHGAGRRMSRKKAK
HLVQGGQLRRELEAMGVSVQAGSLAGLAEEAPRAYKDIDDVVSTVVSAGIARKVAKLVPVGIMKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=495, Percent_Identity=42.4242424242424, Blast_Score=404, Evalue=1e-112,
Organism=Escherichia coli, GI2367224, Length=409, Percent_Identity=32.518337408313, Blast_Score=154, Evalue=8e-39,
Organism=Caenorhabditis elegans, GI17506665, Length=495, Percent_Identity=44.2424242424242, Blast_Score=412, Evalue=1e-115,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=42.3076923076923, Blast_Score=392, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 50543; Mature: 50543

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS01288 UPF0027

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSSIREIEERLWEIPRSYRSDMRVPARFYASEAMLDQILADRSLEQLVNVATLPGIVG
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YALAMPDIHEGYGFPIGGVAAFDLDEGVISPGGIGYDINCGVRLLASSERFEELRDSIGE
HHHHCCCHHCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCEEEEECHHHHHHHHHHHHH
LAREIYRQVPSGVGHGNQITFSSKQLDQVLRDGAPRMVEFGYGEPEDLGHIESGGVLDAA
HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCCCCCEEECCCCCCHHCCCCCCCCCCCCC
DASKVSEHAKQRGRDQLGTMGAGNHFVEIDRIDTIYDCDAAGRMGLFEGQVVIQLHTGSR
HHHHHHHHHHHCCHHHHCCCCCCCCEEEECCCCEEEECCCCCCCCEECCEEEEEEECCCC
GLGHQIATDFIRVMNRAMPMYGITVPDRELCCVPFRSAEGQEYFSAMSAGANFAWSNRQL
CCHHHHHHHHHHHHHHCCCCEECCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEECCCEE
ITWEIRQAWKAVIGSSPLRVVYDVAHNIAKVETHEIDGQSRQLLVHRKGATRAFPGQPVI
EEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEE
IPGSMGTASFVLEGAPASMRESFGSSCHGAGRRMSRKKAKHLVQGGQLRRELEAMGVSVQ
EECCCCCHHEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
AGSLAGLAEEAPRAYKDIDDVVSTVVSAGIARKVAKLVPVGIMKG
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKRSSIREIEERLWEIPRSYRSDMRVPARFYASEAMLDQILADRSLEQLVNVATLPGIVG
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YALAMPDIHEGYGFPIGGVAAFDLDEGVISPGGIGYDINCGVRLLASSERFEELRDSIGE
HHHHCCCHHCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCEEEEECHHHHHHHHHHHHH
LAREIYRQVPSGVGHGNQITFSSKQLDQVLRDGAPRMVEFGYGEPEDLGHIESGGVLDAA
HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCCCCCEEECCCCCCHHCCCCCCCCCCCCC
DASKVSEHAKQRGRDQLGTMGAGNHFVEIDRIDTIYDCDAAGRMGLFEGQVVIQLHTGSR
HHHHHHHHHHHCCHHHHCCCCCCCCEEEECCCCEEEECCCCCCCCEECCEEEEEEECCCC
GLGHQIATDFIRVMNRAMPMYGITVPDRELCCVPFRSAEGQEYFSAMSAGANFAWSNRQL
CCHHHHHHHHHHHHHHCCCCEECCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEECCCEE
ITWEIRQAWKAVIGSSPLRVVYDVAHNIAKVETHEIDGQSRQLLVHRKGATRAFPGQPVI
EEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEE
IPGSMGTASFVLEGAPASMRESFGSSCHGAGRRMSRKKAKHLVQGGQLRRELEAMGVSVQ
EECCCCCHHEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
AGSLAGLAEEAPRAYKDIDDVVSTVVSAGIARKVAKLVPVGIMKG
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA