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The map label for this gene is 193212280

Identifier: 193212280

GI number: 193212280

Start: 655229

End: 655777

Strand: Direct

Name: 193212280

Synonym: Cpar_0613

Alternate gene names: NA

Gene position: 655229-655777 (Clockwise)

Preceding gene: 193212279

Following gene: 193212281

Centisome position: 28.62

GC content: 62.3

Gene sequence:

>549_bases
ATGGACGGCAGAAGGGTTTTCGTGGGGTTGCCTACGAGTCGTGACCTGGCTGAAGCGGCGATGGAGTTCCGGCAGTCGCA
TCGTGAACTGAAGGTGCGCTGGGTCAAACCGGAAAATCTGCACCTCACGATGGTGCCGCCGTGGCCGTGCGTCGATGTCG
ATGCGGTTTGCCGCGCCTTGCAGGACGAGGCCACGCGGCAAGCGCCTTTCGAGGTCACGTTCGAGCGCGTTTCGTTTGGC
CCCGATTCGCGTCGCCCGAGGCTTGTCTGGGCTACCGGAAAAGCGCCCACCGGGATGCCGGAGTTTTCCGGAAGGCTTCT
CGCGGCGTCAGGAGCGCCGGGAGAGTCCCGCAAGTCGTTCCTTTTGCATCTGACCATCGCCCGGTTCAATTTGCGCGATT
ACGGCACGATGGGCGTCCGCAAACTGCGTGAACAGGTGGTGTGGACGGGCACGCTCGATTCGCTCTGTCTCTACGAATCA
ATCCTCAAACCCGGCGGCGCCGAGTACCGTGAATTGTGCCGGTTCACGCTGACGGGTGGGGCGTTTTGA

Upstream 100 bases:

>100_bases
GCGGTGCGCGGGACGAGATCAAGGCGGTGACCTATCATGGCGCGAAGGTCGAAGAGCGTGCCGATGGTTCGTGGATGGCA
ATGGTGCTGATGGATATCTG

Downstream 100 bases:

>100_bases
GTTCGACGTTTGCTCTCTTTAAAAAAGAAATTCTTCTTTGGCAGAATAAAATCGTATCATGATGCCCGATTAACGATGAT
TCGATCTGTTTGCGTTTTCT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDGRRVFVGLPTSRDLAEAAMEFRQSHRELKVRWVKPENLHLTMVPPWPCVDVDAVCRALQDEATRQAPFEVTFERVSFG
PDSRRPRLVWATGKAPTGMPEFSGRLLAASGAPGESRKSFLLHLTIARFNLRDYGTMGVRKLREQVVWTGTLDSLCLYES
ILKPGGAEYRELCRFTLTGGAF

Sequences:

>Translated_182_residues
MDGRRVFVGLPTSRDLAEAAMEFRQSHRELKVRWVKPENLHLTMVPPWPCVDVDAVCRALQDEATRQAPFEVTFERVSFG
PDSRRPRLVWATGKAPTGMPEFSGRLLAASGAPGESRKSFLLHLTIARFNLRDYGTMGVRKLREQVVWTGTLDSLCLYES
ILKPGGAEYRELCRFTLTGGAF
>Mature_182_residues
MDGRRVFVGLPTSRDLAEAAMEFRQSHRELKVRWVKPENLHLTMVPPWPCVDVDAVCRALQDEATRQAPFEVTFERVSFG
PDSRRPRLVWATGKAPTGMPEFSGRLLAASGAPGESRKSFLLHLTIARFNLRDYGTMGVRKLREQVVWTGTLDSLCLYES
ILKPGGAEYRELCRFTLTGGAF

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 20486; Mature: 20486

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGRRVFVGLPTSRDLAEAAMEFRQSHRELKVRWVKPENLHLTMVPPWPCVDVDAVCRAL
CCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEECCCCCCCHHHHHHHH
QDEATRQAPFEVTFERVSFGPDSRRPRLVWATGKAPTGMPEFSGRLLAASGAPGESRKSF
HHHHHCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEE
LLHLTIARFNLRDYGTMGVRKLREQVVWTGTLDSLCLYESILKPGGAEYRELCRFTLTGG
EEEEEEEEECCCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
AF
CC
>Mature Secondary Structure
MDGRRVFVGLPTSRDLAEAAMEFRQSHRELKVRWVKPENLHLTMVPPWPCVDVDAVCRAL
CCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEECCCCCCCHHHHHHHH
QDEATRQAPFEVTFERVSFGPDSRRPRLVWATGKAPTGMPEFSGRLLAASGAPGESRKSF
HHHHHCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEE
LLHLTIARFNLRDYGTMGVRKLREQVVWTGTLDSLCLYESILKPGGAEYRELCRFTLTGG
EEEEEEEEECCCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
AF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]