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The map label for this gene is ydjI [H]

Identifier: 193211981

GI number: 193211981

Start: 325966

End: 326973

Strand: Direct

Name: ydjI [H]

Synonym: Cpar_0308

Alternate gene names: 193211981

Gene position: 325966-326973 (Clockwise)

Preceding gene: 193211980

Following gene: 193211982

Centisome position: 14.24

GC content: 59.52

Gene sequence:

>1008_bases
ATGGCGTTATGGAACTCAGTCACGGGGCAGCTCCGTTCGGTCATCGAGTGGAAAAACCCGGCTCCGGGTGTGCTTTTTGA
GCGCTGGACGGATAACGGTGATGAGATAAAAAACGCATCGAAGCTGATCGTCGGCCCCGGTCAGGGCGTGATTTTCGTCT
ATGAGGGCAAGCCGCAGGCGGCCATCACCGAACCCGGCATGACCGACCTGAAAACGGCGAACATTCCGTTCTGGACGACC
ATTACCAAGTTCATGCAGGCGTTCCAGAGTGAGCACAAGGTCGGCATCTATTTTTTCCGGACAGCCGAAATCCTGAACCA
GGGGTGGGGAACGCCGGGGCCGATCAAGTACCTCGACCCGCAGTACAAATTTCCCGTCGGGATGAGAGGGTATGGCAACT
TCTCGTTCCGGATTACCGATGCCGGAAGTTTCTTCGTCAACATCATGGGCCAGCGCGATGAGCTGACCATCGATGAACTC
CGGACGGCGATCGTGGCAAGGCTGGTGCAGCCGCTGACCGATTTTCTCGCCGAGGCCAAATTTGGCTACAACGAAATCGA
CGCCAACCGGAACGAGATTGCTGACGGCGTCAAAGAGAAGGTCGCGCCGATTTTCGCGACGCTTGGCTTCGGGCTGACCG
ATTTTCGCGTCGAGAACACCGACTTCGACGATGACACGAAGCGCCGCGTGGGGCGCGTCGCGGACATGCAGGCCGAAGCG
CAGGCTGCGCAGGCGGTGGGCGTCGATTTCGCCAAGCTCCAGCAGCTCGCCGCGCTCCGCGATGCTGCACAGAATGAGGG
CGGCGCTGCCGGTGCGGGCGTCGGACTTGGAGCGGGCGTCGGACTGGGGCAGGCGATGGCGGGTATGATGAGCGGCATGA
ACACCCCACAGCCGGCTACGGAAGATCCGGTGGCCAAGCTTTCCCAGCTGAAGCAGATGCTCGACAATCAGCTGATCAGC
CAGGAAGAGTACGATGCGAAAAAGCAGCAGATTCTTTCGCAACTGTAA

Upstream 100 bases:

>100_bases
AGACCGCGGTTTTGCGTGAAAACAAGAAGCTTGGCAGATTGACGTCTCATTCATAAGTCTTTATGAATTTCTTGAAGCAA
TTGTAAACGGGAGAGATGCT

Downstream 100 bases:

>100_bases
CCGGGTAACCGTTGCCATGCGAACAGGCTTTTTCTCGCGATTCCTTGTTTCCGCCACCATTGCCGTGCTTGGCCTGCCAT
GCTTCTCCGCCGAGCTTCTT

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MALWNSVTGQLRSVIEWKNPAPGVLFERWTDNGDEIKNASKLIVGPGQGVIFVYEGKPQAAITEPGMTDLKTANIPFWTT
ITKFMQAFQSEHKVGIYFFRTAEILNQGWGTPGPIKYLDPQYKFPVGMRGYGNFSFRITDAGSFFVNIMGQRDELTIDEL
RTAIVARLVQPLTDFLAEAKFGYNEIDANRNEIADGVKEKVAPIFATLGFGLTDFRVENTDFDDDTKRRVGRVADMQAEA
QAAQAVGVDFAKLQQLAALRDAAQNEGGAAGAGVGLGAGVGLGQAMAGMMSGMNTPQPATEDPVAKLSQLKQMLDNQLIS
QEEYDAKKQQILSQL

Sequences:

>Translated_335_residues
MALWNSVTGQLRSVIEWKNPAPGVLFERWTDNGDEIKNASKLIVGPGQGVIFVYEGKPQAAITEPGMTDLKTANIPFWTT
ITKFMQAFQSEHKVGIYFFRTAEILNQGWGTPGPIKYLDPQYKFPVGMRGYGNFSFRITDAGSFFVNIMGQRDELTIDEL
RTAIVARLVQPLTDFLAEAKFGYNEIDANRNEIADGVKEKVAPIFATLGFGLTDFRVENTDFDDDTKRRVGRVADMQAEA
QAAQAVGVDFAKLQQLAALRDAAQNEGGAAGAGVGLGAGVGLGQAMAGMMSGMNTPQPATEDPVAKLSQLKQMLDNQLIS
QEEYDAKKQQILSQL
>Mature_334_residues
ALWNSVTGQLRSVIEWKNPAPGVLFERWTDNGDEIKNASKLIVGPGQGVIFVYEGKPQAAITEPGMTDLKTANIPFWTTI
TKFMQAFQSEHKVGIYFFRTAEILNQGWGTPGPIKYLDPQYKFPVGMRGYGNFSFRITDAGSFFVNIMGQRDELTIDELR
TAIVARLVQPLTDFLAEAKFGYNEIDANRNEIADGVKEKVAPIFATLGFGLTDFRVENTDFDDDTKRRVGRVADMQAEAQ
AAQAVGVDFAKLQQLAALRDAAQNEGGAAGAGVGLGAGVGLGQAMAGMMSGMNTPQPATEDPVAKLSQLKQMLDNQLISQ
EEYDAKKQQILSQL

Specific function: Unknown

COG id: COG4260

COG function: function code S; Putative virion core protein (lumpy skin disease virus)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 36599; Mature: 36468

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALWNSVTGQLRSVIEWKNPAPGVLFERWTDNGDEIKNASKLIVGPGQGVIFVYEGKPQA
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCEEEEECCCCCC
AITEPGMTDLKTANIPFWTTITKFMQAFQSEHKVGIYFFRTAEILNQGWGTPGPIKYLDP
EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCC
QYKFPVGMRGYGNFSFRITDAGSFFVNIMGQRDELTIDELRTAIVARLVQPLTDFLAEAK
CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FGYNEIDANRNEIADGVKEKVAPIFATLGFGLTDFRVENTDFDDDTKRRVGRVADMQAEA
CCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
QAAQAVGVDFAKLQQLAALRDAAQNEGGAAGAGVGLGAGVGLGQAMAGMMSGMNTPQPAT
HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
EDPVAKLSQLKQMLDNQLISQEEYDAKKQQILSQL
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
>Mature Secondary Structure 
ALWNSVTGQLRSVIEWKNPAPGVLFERWTDNGDEIKNASKLIVGPGQGVIFVYEGKPQA
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCEEEEECCCCCC
AITEPGMTDLKTANIPFWTTITKFMQAFQSEHKVGIYFFRTAEILNQGWGTPGPIKYLDP
EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCC
QYKFPVGMRGYGNFSFRITDAGSFFVNIMGQRDELTIDELRTAIVARLVQPLTDFLAEAK
CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FGYNEIDANRNEIADGVKEKVAPIFATLGFGLTDFRVENTDFDDDTKRRVGRVADMQAEA
CCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
QAAQAVGVDFAKLQQLAALRDAAQNEGGAAGAGVGLGAGVGLGQAMAGMMSGMNTPQPAT
HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
EDPVAKLSQLKQMLDNQLISQEEYDAKKQQILSQL
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]