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The map label for this gene is secD [H]

Identifier: 193211687

GI number: 193211687

Start: 13665

End: 15464

Strand: Direct

Name: secD [H]

Synonym: Cpar_0011

Alternate gene names: 193211687

Gene position: 13665-15464 (Clockwise)

Preceding gene: 193211686

Following gene: 193211688

Centisome position: 0.6

GC content: 55.83

Gene sequence:

>1800_bases
ATGAAAAACAACACCTTTAAACTCATCCTGATTGCCGTGGTCGCGCTGGTTTCGGTATGGTCGATCTGGCCTACGTACCG
GGATTATGCTCTGACAAAAAAGCTCAACAGCTTTGATTCCCGTGCCGATAGCCTGAAGTTTGCTCTCGACCATCGTCAAG
AAATCGAGCAGGCTCACGACAAAAGTCTGAAACTCGGCCTCGATCTGAAGGGCGGTATGCACCTGGTGATGGAGGTTGAT
ATTCTTGATCTGATCGAGCAGAAAGCCTGGAACAAGGATGACAAGTTCAACCGCATTATGGACAACGTTCGCCGACAGGC
TGGCGAGTCCAACGACAATGTGGTCAATATTCTGGCTGCCGAGTTCAGAAAGGAGAATATCAAGCTCAGCCGTTACTTCT
ATGACCTTCGTGACTCGGATCAGGAGGTTATTTCCAAGCTGAATGCCGAGGCGCAGGACGCACTGATTAGGGCCAAGGAG
ATTATCCGTAACCGTATCGACCAGTACGGTGTGGCCGAGCCGGTGATCCAGACCCAGGGTTCGCGTCGCCTGATTATCGA
GCTTTCGGGCGTGACCGATGAGGCTCGCGTGCGCAGACTTCTGATGGGTACGGCAAAGCTTGAGTTCAAGCTGGTCAAAG
AGCCGCAGCAACTGCTTCGTGCGGTTGAACGCGCTGGAACGGTGTCGCTGCAGGCGCCGTCAAGGCCTGTGCAGGCAGAT
TCAGCTCAGGTCTCTGCTGGCGGGGTTGTCGCCAAAAAGCTCTCCGAGGTGATTGGCGTGATGCCGAATGGCCAGGTGTT
TACGCCGGCTTATGCCCATGACCTGGTTGCCGCAGCCCTGAAGCGCGATGATGTGAATGCATTGCTTCCGCAGGATACCC
AGTTGCTGCTCTCGGCCAAGCCCGAGCAGACGGCAAAGGGCGAGAAGTATTACCTGCTCTATCTGGTTCAGAAAACCCCC
GAACTGACCGGCGGCGTGATTACCGAGGCGAAGGCGACTTTCAGTTCGCAGGACTCCCAGCCGGAGGTGCTCATGTCGAT
GAACGACGAGGGCACGTCGAAATGGGCCCGCATCACTGGCGCCAATATCGGCAAGCAGATTGCCATCGTGCTTGACGGTT
CGGTCTATAGCGCACCGGTTGTGCAGTCGCGAATTCCGAGCGGCAATTCGGTGATCAACGGCATCGGCAGTCTTGATGAG
GCCAAGGATCTCGAAATCATCCTGAAAGCCGGCTCGTTGCCCGCTCCTGTCCGGATTCTCGAAGAGCGTACCGTCGGTCC
ATCGCTGGGTTCGGACTACATCCGCGACGGTCTTCTGTCGGTGACCTGGGGTTTCACGGCCGTGGCTCTGTTCATGATCT
TCTACTATCACAAGGCCGGCATCGCCGCTGATCTTGCGCTGGTGCTCAATATCCTGATTGTCATTTCGGTGCTTGCCGGA
TTCAGCGCAGCCCTGACCCTGCCCGGTATCGCCGGTATCGTGCTGACGATGGGTATGGCTGTTGACGCCAACGTGCTGAT
TTACGAGCGCATCCGGGAGGAGCTTGCCGATGGCAAAAGCCTTCGGATGGCTATCGACACCGGTTACAACAAGGCTTTCT
CTTCGATTCTCGACTCTCACGTGACCACGCTTGCGGCGGCCTTCCTGCTGTACGTCTATGGTGTCGGTCCGGTGCAGGGT
TTCGCTGTTACCCTGATGATCGGTACGGCGGCAAGTCTCTTTACGGCGATCGTGGTGACCAAGGTGCTCTTCGACCTGTT
CTTCGAGAGCAAGCTCATGAATGAAAAAAGTTTCGGATAA

Upstream 100 bases:

>100_bases
TTTCCAACCTCTGTTATGGCCTTGCGTGCTCAATTGTTAATCCAGAGCCGGTTCTTTATATTGGCTTTTCTTTATCAATC
GTGCGTAACGGCTTTTTTTC

Downstream 100 bases:

>100_bases
TTACAATACTCTGCTGAAATGCGGCTTTTTCAGAAATCCAATATCAATTTCATGGGCCATCGCAAGATCGCCTATGTAAT
CTCAACTGTCCTGCTTGTTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 599; Mature: 599

Protein sequence:

>599_residues
MKNNTFKLILIAVVALVSVWSIWPTYRDYALTKKLNSFDSRADSLKFALDHRQEIEQAHDKSLKLGLDLKGGMHLVMEVD
ILDLIEQKAWNKDDKFNRIMDNVRRQAGESNDNVVNILAAEFRKENIKLSRYFYDLRDSDQEVISKLNAEAQDALIRAKE
IIRNRIDQYGVAEPVIQTQGSRRLIIELSGVTDEARVRRLLMGTAKLEFKLVKEPQQLLRAVERAGTVSLQAPSRPVQAD
SAQVSAGGVVAKKLSEVIGVMPNGQVFTPAYAHDLVAAALKRDDVNALLPQDTQLLLSAKPEQTAKGEKYYLLYLVQKTP
ELTGGVITEAKATFSSQDSQPEVLMSMNDEGTSKWARITGANIGKQIAIVLDGSVYSAPVVQSRIPSGNSVINGIGSLDE
AKDLEIILKAGSLPAPVRILEERTVGPSLGSDYIRDGLLSVTWGFTAVALFMIFYYHKAGIAADLALVLNILIVISVLAG
FSAALTLPGIAGIVLTMGMAVDANVLIYERIREELADGKSLRMAIDTGYNKAFSSILDSHVTTLAAAFLLYVYGVGPVQG
FAVTLMIGTAASLFTAIVVTKVLFDLFFESKLMNEKSFG

Sequences:

>Translated_599_residues
MKNNTFKLILIAVVALVSVWSIWPTYRDYALTKKLNSFDSRADSLKFALDHRQEIEQAHDKSLKLGLDLKGGMHLVMEVD
ILDLIEQKAWNKDDKFNRIMDNVRRQAGESNDNVVNILAAEFRKENIKLSRYFYDLRDSDQEVISKLNAEAQDALIRAKE
IIRNRIDQYGVAEPVIQTQGSRRLIIELSGVTDEARVRRLLMGTAKLEFKLVKEPQQLLRAVERAGTVSLQAPSRPVQAD
SAQVSAGGVVAKKLSEVIGVMPNGQVFTPAYAHDLVAAALKRDDVNALLPQDTQLLLSAKPEQTAKGEKYYLLYLVQKTP
ELTGGVITEAKATFSSQDSQPEVLMSMNDEGTSKWARITGANIGKQIAIVLDGSVYSAPVVQSRIPSGNSVINGIGSLDE
AKDLEIILKAGSLPAPVRILEERTVGPSLGSDYIRDGLLSVTWGFTAVALFMIFYYHKAGIAADLALVLNILIVISVLAG
FSAALTLPGIAGIVLTMGMAVDANVLIYERIREELADGKSLRMAIDTGYNKAFSSILDSHVTTLAAAFLLYVYGVGPVQG
FAVTLMIGTAASLFTAIVVTKVLFDLFFESKLMNEKSFG
>Mature_599_residues
MKNNTFKLILIAVVALVSVWSIWPTYRDYALTKKLNSFDSRADSLKFALDHRQEIEQAHDKSLKLGLDLKGGMHLVMEVD
ILDLIEQKAWNKDDKFNRIMDNVRRQAGESNDNVVNILAAEFRKENIKLSRYFYDLRDSDQEVISKLNAEAQDALIRAKE
IIRNRIDQYGVAEPVIQTQGSRRLIIELSGVTDEARVRRLLMGTAKLEFKLVKEPQQLLRAVERAGTVSLQAPSRPVQAD
SAQVSAGGVVAKKLSEVIGVMPNGQVFTPAYAHDLVAAALKRDDVNALLPQDTQLLLSAKPEQTAKGEKYYLLYLVQKTP
ELTGGVITEAKATFSSQDSQPEVLMSMNDEGTSKWARITGANIGKQIAIVLDGSVYSAPVVQSRIPSGNSVINGIGSLDE
AKDLEIILKAGSLPAPVRILEERTVGPSLGSDYIRDGLLSVTWGFTAVALFMIFYYHKAGIAADLALVLNILIVISVLAG
FSAALTLPGIAGIVLTMGMAVDANVLIYERIREELADGKSLRMAIDTGYNKAFSSILDSHVTTLAAAFLLYVYGVGPVQG
FAVTLMIGTAASLFTAIVVTKVLFDLFFESKLMNEKSFG

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=566, Percent_Identity=34.0989399293286, Blast_Score=233, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65530; Mature: 65530

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNTFKLILIAVVALVSVWSIWPTYRDYALTKKLNSFDSRADSLKFALDHRQEIEQAHD
CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KSLKLGLDLKGGMHLVMEVDILDLIEQKAWNKDDKFNRIMDNVRRQAGESNDNVVNILAA
CCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHH
EFRKENIKLSRYFYDLRDSDQEVISKLNAEAQDALIRAKEIIRNRIDQYGVAEPVIQTQG
HHHHCCCCHHHHEEHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
SRRLIIELSGVTDEARVRRLLMGTAKLEFKLVKEPQQLLRAVERAGTVSLQAPSRPVQAD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCEEEECCCCCCCCC
SAQVSAGGVVAKKLSEVIGVMPNGQVFTPAYAHDLVAAALKRDDVNALLPQDTQLLLSAK
CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
PEQTAKGEKYYLLYLVQKTPELTGGVITEAKATFSSQDSQPEVLMSMNDEGTSKWARITG
CCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHEEC
ANIGKQIAIVLDGSVYSAPVVQSRIPSGNSVINGIGSLDEAKDLEIILKAGSLPAPVRIL
CCCCCEEEEEECCCCCCCCHHHHCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCHHHH
EERTVGPSLGSDYIRDGLLSVTWGFTAVALFMIFYYHKAGIAADLALVLNILIVISVLAG
HHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
FSAALTLPGIAGIVLTMGMAVDANVLIYERIREELADGKSLRMAIDTGYNKAFSSILDSH
CHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH
VTTLAAAFLLYVYGVGPVQGFAVTLMIGTAASLFTAIVVTKVLFDLFFESKLMNEKSFG
HHHHHHHHHHHHHCCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKNNTFKLILIAVVALVSVWSIWPTYRDYALTKKLNSFDSRADSLKFALDHRQEIEQAHD
CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KSLKLGLDLKGGMHLVMEVDILDLIEQKAWNKDDKFNRIMDNVRRQAGESNDNVVNILAA
CCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHH
EFRKENIKLSRYFYDLRDSDQEVISKLNAEAQDALIRAKEIIRNRIDQYGVAEPVIQTQG
HHHHCCCCHHHHEEHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
SRRLIIELSGVTDEARVRRLLMGTAKLEFKLVKEPQQLLRAVERAGTVSLQAPSRPVQAD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCEEEECCCCCCCCC
SAQVSAGGVVAKKLSEVIGVMPNGQVFTPAYAHDLVAAALKRDDVNALLPQDTQLLLSAK
CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
PEQTAKGEKYYLLYLVQKTPELTGGVITEAKATFSSQDSQPEVLMSMNDEGTSKWARITG
CCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHEEC
ANIGKQIAIVLDGSVYSAPVVQSRIPSGNSVINGIGSLDEAKDLEIILKAGSLPAPVRIL
CCCCCEEEEEECCCCCCCCHHHHCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCHHHH
EERTVGPSLGSDYIRDGLLSVTWGFTAVALFMIFYYHKAGIAADLALVLNILIVISVLAG
HHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
FSAALTLPGIAGIVLTMGMAVDANVLIYERIREELADGKSLRMAIDTGYNKAFSSILDSH
CHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH
VTTLAAAFLLYVYGVGPVQGFAVTLMIGTAASLFTAIVVTKVLFDLFFESKLMNEKSFG
HHHHHHHHHHHHHCCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA