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The map label for this gene is ygeR [H]

Identifier: 192291552

GI number: 192291552

Start: 3424716

End: 3426131

Strand: Reverse

Name: ygeR [H]

Synonym: Rpal_3178

Alternate gene names: 192291552

Gene position: 3426131-3424716 (Counterclockwise)

Preceding gene: 192291553

Following gene: 192291550

Centisome position: 59.65

GC content: 69.77

Gene sequence:

>1416_bases
ATGTCCCGCGTTGCCGCGTTGCTTTGCTCGCGCCGCGCCCCGCAAATGGCGGTGCTGGCGTTGATGTCTGTCGGTTTCAG
TGCGTGCAGCTCCGACATGCAGACACGCTTCCAACAGGCCCCGTTCGGGCCGGTTGAGACCACAGGCTCGGTGGCGCCCC
AGCATCAGCGCCAGGAGCTGCCGCAATACGCGCGGCCCCAGTATCAGCCCCAGCCGCAATACCAGTCGCAGGCACTGCCG
CCGATCGCGTCGCCGTCATCCTACCCGGTGGCAAATGGGGGCGGGGGCTTCTCCGGCGGAGGGCGCGGTGTCGGGTCCTA
TGAACCGCCGCCGCGTGCGCCGATCGATCAGACCGGCACCGTTCAGGCGACGCGCTCGGTCGCTGCGGCCCGGCCGATGC
CGGCTGCTCCCGCAGCCGCTGCACCGGTCCATGCGCCCGGCACGACGATCATCGTCGGCACGAGCGATACGCTGGAAATC
CTGGCGCAGCGCTACAACGTTTCGACCGCCGAGATCCTGCGCGCTAACGGCTACAAGGGCCCGCGCCGGCTGCAGCCCGG
CCAGCAGCTTGTGATCCCGAGCCGTGCCACTGCGACCGCCCAGGTGGCAGCTCCGGTCGCCGCGCCGATGTCCGCTCCGC
CGGCTCCGCGTCCGGTTGCGACCGCTGCGCCGGCCCCAGCGCGCGTGCACTACGTCAACAACGGCGACACGCTGATGAAC
ATTGCGCGCCGCAACAACATCTCGCTCGGCGAGCTGGCGCGCTACAACAACCTCACCACCACCACGAAGCTGAAGCCGGG
CATGAAGATCAACGTGCCGGGCGCCCAGGTCGCGGGTCTCGCGCCGGCACAGCCCCCGATCCAGGCGCCGGCCGCCGCCC
CGATGGCGGCTCCGCAGGTGCGGATGGCCAACGTCGCTCCGACGGTCCCGGCCGAGCCGCCGCAGAAGGCGCGGATGGTG
GCGCCGACCGAGACTCCCGAAGCTGCTGCGCCGGCCGAAGCGGCACCGGTGAAGTCGGCCGAAGCAACTGGAGCGCTGCC
GAGCTTCCGCTGGCCGGCCCGCGGCCGGGTGATCGCGGCCTACGGCGCCAAGACCAACGGCAAGTCCAACGACGGCATCA
ACCTGTCGGTGCCGGAAGGCACGCCGGTGAAGGCCGCCGAAGACGGCGTCGTCGCCTACGCCGGCAGCGAACTGAAGGGC
TACGGCAATCTGGTGCTGATCCGCCACTCCAACGGTTACGTCTCGGCTTACGCTCACGCCAGCGAGCTGATGGTGAAGCG
CGGCGAGACTATCAAGCGCGGCCAGGTAATCGCCAAGTCGGGCCAGAGCGGCGAGGTGTCTTCACCGCAGCTGCACTTCG
AGATCCGCAAGGGATCGACCCCGGTCGACCCGCTGAAGTTCCTCAACGGCGCCTGA

Upstream 100 bases:

>100_bases
TCTCAGCGTCAACAAGCGGTTTCTTTGCAAGGTTAAACGCTTGTTTACTGGCGCGGTGTTTACTCAATTTACCAATCGTA
TTGCGTATGAGTGAGTAACC

Downstream 100 bases:

>100_bases
GCAACGCGGTTGAGCGATACTGGGGAAGAAGAAATGCCCGGCCCGAAAGGCCGGGCATTTTTGTTTGGACGCCGCGATCG
GTGAAGACGAACTGACAACT

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSRVAALLCSRRAPQMAVLALMSVGFSACSSDMQTRFQQAPFGPVETTGSVAPQHQRQELPQYARPQYQPQPQYQSQALP
PIASPSSYPVANGGGGFSGGGRGVGSYEPPPRAPIDQTGTVQATRSVAAARPMPAAPAAAAPVHAPGTTIIVGTSDTLEI
LAQRYNVSTAEILRANGYKGPRRLQPGQQLVIPSRATATAQVAAPVAAPMSAPPAPRPVATAAPAPARVHYVNNGDTLMN
IARRNNISLGELARYNNLTTTTKLKPGMKINVPGAQVAGLAPAQPPIQAPAAAPMAAPQVRMANVAPTVPAEPPQKARMV
APTETPEAAAPAEAAPVKSAEATGALPSFRWPARGRVIAAYGAKTNGKSNDGINLSVPEGTPVKAAEDGVVAYAGSELKG
YGNLVLIRHSNGYVSAYAHASELMVKRGETIKRGQVIAKSGQSGEVSSPQLHFEIRKGSTPVDPLKFLNGA

Sequences:

>Translated_471_residues
MSRVAALLCSRRAPQMAVLALMSVGFSACSSDMQTRFQQAPFGPVETTGSVAPQHQRQELPQYARPQYQPQPQYQSQALP
PIASPSSYPVANGGGGFSGGGRGVGSYEPPPRAPIDQTGTVQATRSVAAARPMPAAPAAAAPVHAPGTTIIVGTSDTLEI
LAQRYNVSTAEILRANGYKGPRRLQPGQQLVIPSRATATAQVAAPVAAPMSAPPAPRPVATAAPAPARVHYVNNGDTLMN
IARRNNISLGELARYNNLTTTTKLKPGMKINVPGAQVAGLAPAQPPIQAPAAAPMAAPQVRMANVAPTVPAEPPQKARMV
APTETPEAAAPAEAAPVKSAEATGALPSFRWPARGRVIAAYGAKTNGKSNDGINLSVPEGTPVKAAEDGVVAYAGSELKG
YGNLVLIRHSNGYVSAYAHASELMVKRGETIKRGQVIAKSGQSGEVSSPQLHFEIRKGSTPVDPLKFLNGA
>Mature_470_residues
SRVAALLCSRRAPQMAVLALMSVGFSACSSDMQTRFQQAPFGPVETTGSVAPQHQRQELPQYARPQYQPQPQYQSQALPP
IASPSSYPVANGGGGFSGGGRGVGSYEPPPRAPIDQTGTVQATRSVAAARPMPAAPAAAAPVHAPGTTIIVGTSDTLEIL
AQRYNVSTAEILRANGYKGPRRLQPGQQLVIPSRATATAQVAAPVAAPMSAPPAPRPVATAAPAPARVHYVNNGDTLMNI
ARRNNISLGELARYNNLTTTTKLKPGMKINVPGAQVAGLAPAQPPIQAPAAAPMAAPQVRMANVAPTVPAEPPQKARMVA
PTETPEAAAPAEAAPVKSAEATGALPSFRWPARGRVIAAYGAKTNGKSNDGINLSVPEGTPVKAAEDGVVAYAGSELKGY
GNLVLIRHSNGYVSAYAHASELMVKRGETIKRGQVIAKSGQSGEVSSPQLHFEIRKGSTPVDPLKFLNGA

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=240, Percent_Identity=32.9166666666667, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=45, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=37.8151260504202, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=40, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 48735; Mature: 48604

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVAALLCSRRAPQMAVLALMSVGFSACSSDMQTRFQQAPFGPVETTGSVAPQHQRQEL
CHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHC
PQYARPQYQPQPQYQSQALPPIASPSSYPVANGGGGFSGGGRGVGSYEPPPRAPIDQTGT
HHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VQATRSVAAARPMPAAPAAAAPVHAPGTTIIVGTSDTLEILAQRYNVSTAEILRANGYKG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCC
PRRLQPGQQLVIPSRATATAQVAAPVAAPMSAPPAPRPVATAAPAPARVHYVNNGDTLMN
CCCCCCCCEEEECCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
IARRNNISLGELARYNNLTTTTKLKPGMKINVPGAQVAGLAPAQPPIQAPAAAPMAAPQV
HHHHCCCCHHHHHHHCCCCEEEEECCCCEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCE
RMANVAPTVPAEPPQKARMVAPTETPEAAAPAEAAPVKSAEATGALPSFRWPARGRVIAA
EECCCCCCCCCCCCHHCEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEE
YGAKTNGKSNDGINLSVPEGTPVKAAEDGVVAYAGSELKGYGNLVLIRHSNGYVSAYAHA
ECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCEEEEHHHH
SELMVKRGETIKRGQVIAKSGQSGEVSSPQLHFEIRKGSTPVDPLKFLNGA
HHHHHHCCCCHHCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHCCC
>Mature Secondary Structure 
SRVAALLCSRRAPQMAVLALMSVGFSACSSDMQTRFQQAPFGPVETTGSVAPQHQRQEL
HHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHC
PQYARPQYQPQPQYQSQALPPIASPSSYPVANGGGGFSGGGRGVGSYEPPPRAPIDQTGT
HHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VQATRSVAAARPMPAAPAAAAPVHAPGTTIIVGTSDTLEILAQRYNVSTAEILRANGYKG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCC
PRRLQPGQQLVIPSRATATAQVAAPVAAPMSAPPAPRPVATAAPAPARVHYVNNGDTLMN
CCCCCCCCEEEECCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
IARRNNISLGELARYNNLTTTTKLKPGMKINVPGAQVAGLAPAQPPIQAPAAAPMAAPQV
HHHHCCCCHHHHHHHCCCCEEEEECCCCEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCE
RMANVAPTVPAEPPQKARMVAPTETPEAAAPAEAAPVKSAEATGALPSFRWPARGRVIAA
EECCCCCCCCCCCCHHCEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEE
YGAKTNGKSNDGINLSVPEGTPVKAAEDGVVAYAGSELKGYGNLVLIRHSNGYVSAYAHA
ECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCEEEEHHHH
SELMVKRGETIKRGQVIAKSGQSGEVSSPQLHFEIRKGSTPVDPLKFLNGA
HHHHHHCCCCHHCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]