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The map label for this gene is yfgC [C]

Identifier: 192291102

GI number: 192291102

Start: 2953673

End: 2955100

Strand: Reverse

Name: yfgC [C]

Synonym: Rpal_2723

Alternate gene names: 192291102

Gene position: 2955100-2953673 (Counterclockwise)

Preceding gene: 192291106

Following gene: 192291101

Centisome position: 51.45

GC content: 67.37

Gene sequence:

>1428_bases
ATGCTGAAGGACATTGCAGTTTTCGCCGGACGGCTATGCCCGTCCGCACGCAAGCACGCGTCGCGGCTGGTCGCGGGGCT
CACCGCGCTCGCGCTGGCGATCACGCCGGTTCCCGCGCTGGCGCAGGCCCCCACGCCGAAGGGGCCGCCGCTGCTGCGCG
ACACCGAGACCGAGCAGTTGCTGCGCGACTACACCCGCCCGATCCTGCGCGTTGCCGGACTCGAGAAGCAGAACATCCAG
GTCGCAATCATCAACGATCCGACCTTCAACGCCTTCGTCGCCGACGGCCATCGCATCTTCGTCAACTACGGCGCGCTGCT
GCAGTCGGAAACGCCGAATCAACTGATCGGCGTGCTGGCGCACGAAACCGGCCACCTCGCCGGCGGCCATCTCTCGAAGC
TGCGCACCCAGCTCGCGCAGGCGCAGACGCAGATGATCGTCGCGATGCTGCTCGGCGTCGGCGCGATGGTGGCGGGCGCC
AGCGCCGGCCCGAACAGCGGCGCGGCCAATATCGGCGCGGCGGCGATCACCGCGCCGCAGGAAGTGATCCGGCGCAATCT
GCTGTCCTATCAACGCCAGCAGGAGGAGAACGCAGACCGTGCCGCGGTGAAGTTTCTCAATGCCACGCAGCAATCTGCGA
AGGGCATGTACGAGACCTTCCAGCGCTTCACCAATGAGAGCCTGTTCGCGGCGCGCGGCGCCGATCCCTATGCGCAATCG
CATCCGATGCCGGCCGAACGCGTCTCCGCGCTCGCCGAGCTGGCGCGGACCAGCGCGTATTGGGACAAGAAAGACGATCC
GGCGCTGCAGATGCGCCACGAGATGATGCGCGCCAAGGTGTCGGGCTTCATGGAACGGGCCGATACGGTGTACCGGCGCT
ATCCGGCGTCGAACACCAGCCTTCCGGCGCGCTACGCACGCGCGATCGCCAGCTATCTGCACGGCGATCCGCGGTCTGCG
CTGGCACAGATCGACGGCTTGATTCAGGCTCAGCCCAACAATCCCTATTTCTACGAGCTACGCGGTCAGGCGCTGCTCGA
AGGCGGCAAGCCGGCCGAAGCGATCGCACCGCTGCGCAAAGCGGTGGCGATGACCAACGGCGCGCCGCTGATCCAGATCC
TGCTCGGCCAGGCGCTGGTCGCCAGCAACAACAAGGCCTACACCGACGAAGCCATCCAGATCCTGCGCGGCGCGCTCGGC
CGCGAGGGCGAAGTGCCGCTCGGCTTCAGCCATCTGGCAATGGCTTACGGGCAGAAGGGCAACTACGCCGAGGCCGATCT
CGCCTCGGCACAAGCGGCTTACTTGCGAGGCGATGCCAAGACCGCGCGCGAGCTGGCGGCCCGCGCCAAGACCCGCTTCC
CGGTCGGCTCGCCCGGCTGGGTCAAGGCCGACGACATCGTCGCGGCCAAGATGCCGGGCCAGAAATAG

Upstream 100 bases:

>100_bases
TGCTATCCCCGCGCGGTCTGTTCGGTGAACCCGCTGCGCGCCGCGCCGCTGCCGTCTTGCTGGGCCGACCTGGAGATACC
CGGAATTCGATGCTCGGCCA

Downstream 100 bases:

>100_bases
CGTTCCGCGCTTCATTGTCGCGCTGCGGCGGATTGTCCGTTGTCCGCAGCTCTGTCACACTCCCTACGCGGCGATATTTG
TCCGCCTCTTGAGTCTCGCG

Product: peptidase M48 Ste24p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MLKDIAVFAGRLCPSARKHASRLVAGLTALALAITPVPALAQAPTPKGPPLLRDTETEQLLRDYTRPILRVAGLEKQNIQ
VAIINDPTFNAFVADGHRIFVNYGALLQSETPNQLIGVLAHETGHLAGGHLSKLRTQLAQAQTQMIVAMLLGVGAMVAGA
SAGPNSGAANIGAAAITAPQEVIRRNLLSYQRQQEENADRAAVKFLNATQQSAKGMYETFQRFTNESLFAARGADPYAQS
HPMPAERVSALAELARTSAYWDKKDDPALQMRHEMMRAKVSGFMERADTVYRRYPASNTSLPARYARAIASYLHGDPRSA
LAQIDGLIQAQPNNPYFYELRGQALLEGGKPAEAIAPLRKAVAMTNGAPLIQILLGQALVASNNKAYTDEAIQILRGALG
REGEVPLGFSHLAMAYGQKGNYAEADLASAQAAYLRGDAKTARELAARAKTRFPVGSPGWVKADDIVAAKMPGQK

Sequences:

>Translated_475_residues
MLKDIAVFAGRLCPSARKHASRLVAGLTALALAITPVPALAQAPTPKGPPLLRDTETEQLLRDYTRPILRVAGLEKQNIQ
VAIINDPTFNAFVADGHRIFVNYGALLQSETPNQLIGVLAHETGHLAGGHLSKLRTQLAQAQTQMIVAMLLGVGAMVAGA
SAGPNSGAANIGAAAITAPQEVIRRNLLSYQRQQEENADRAAVKFLNATQQSAKGMYETFQRFTNESLFAARGADPYAQS
HPMPAERVSALAELARTSAYWDKKDDPALQMRHEMMRAKVSGFMERADTVYRRYPASNTSLPARYARAIASYLHGDPRSA
LAQIDGLIQAQPNNPYFYELRGQALLEGGKPAEAIAPLRKAVAMTNGAPLIQILLGQALVASNNKAYTDEAIQILRGALG
REGEVPLGFSHLAMAYGQKGNYAEADLASAQAAYLRGDAKTARELAARAKTRFPVGSPGWVKADDIVAAKMPGQK
>Mature_475_residues
MLKDIAVFAGRLCPSARKHASRLVAGLTALALAITPVPALAQAPTPKGPPLLRDTETEQLLRDYTRPILRVAGLEKQNIQ
VAIINDPTFNAFVADGHRIFVNYGALLQSETPNQLIGVLAHETGHLAGGHLSKLRTQLAQAQTQMIVAMLLGVGAMVAGA
SAGPNSGAANIGAAAITAPQEVIRRNLLSYQRQQEENADRAAVKFLNATQQSAKGMYETFQRFTNESLFAARGADPYAQS
HPMPAERVSALAELARTSAYWDKKDDPALQMRHEMMRAKVSGFMERADTVYRRYPASNTSLPARYARAIASYLHGDPRSA
LAQIDGLIQAQPNNPYFYELRGQALLEGGKPAEAIAPLRKAVAMTNGAPLIQILLGQALVASNNKAYTDEAIQILRGALG
REGEVPLGFSHLAMAYGQKGNYAEADLASAQAAYLRGDAKTARELAARAKTRFPVGSPGWVKADDIVAAKMPGQK

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=350, Percent_Identity=22.8571428571429, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011716
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48; PF07720 TPR_3 [H]

EC number: NA

Molecular weight: Translated: 50981; Mature: 50981

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDIAVFAGRLCPSARKHASRLVAGLTALALAITPVPALAQAPTPKGPPLLRDTETEQL
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHH
LRDYTRPILRVAGLEKQNIQVAIINDPTFNAFVADGHRIFVNYGALLQSETPNQLIGVLA
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCEEEEEECHHHCCCCHHHHHHHHH
HETGHLAGGHLSKLRTQLAQAQTQMIVAMLLGVGAMVAGASAGPNSGAANIGAAAITAPQ
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHH
EVIRRNLLSYQRQQEENADRAAVKFLNATQQSAKGMYETFQRFTNESLFAARGADPYAQS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHC
HPMPAERVSALAELARTSAYWDKKDDPALQMRHEMMRAKVSGFMERADTVYRRYPASNTS
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LPARYARAIASYLHGDPRSALAQIDGLIQAQPNNPYFYELRGQALLEGGKPAEAIAPLRK
CHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCCEEEEECCHHHHCCCCCHHHHHHHHH
AVAMTNGAPLIQILLGQALVASNNKAYTDEAIQILRGALGREGEVPLGFSHLAMAYGQKG
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
NYAEADLASAQAAYLRGDAKTARELAARAKTRFPVGSPGWVKADDIVAAKMPGQK
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MLKDIAVFAGRLCPSARKHASRLVAGLTALALAITPVPALAQAPTPKGPPLLRDTETEQL
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHH
LRDYTRPILRVAGLEKQNIQVAIINDPTFNAFVADGHRIFVNYGALLQSETPNQLIGVLA
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCEEEEEECHHHCCCCHHHHHHHHH
HETGHLAGGHLSKLRTQLAQAQTQMIVAMLLGVGAMVAGASAGPNSGAANIGAAAITAPQ
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHH
EVIRRNLLSYQRQQEENADRAAVKFLNATQQSAKGMYETFQRFTNESLFAARGADPYAQS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHC
HPMPAERVSALAELARTSAYWDKKDDPALQMRHEMMRAKVSGFMERADTVYRRYPASNTS
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LPARYARAIASYLHGDPRSALAQIDGLIQAQPNNPYFYELRGQALLEGGKPAEAIAPLRK
CHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCCEEEEECCHHHHCCCCCHHHHHHHHH
AVAMTNGAPLIQILLGQALVASNNKAYTDEAIQILRGALGREGEVPLGFSHLAMAYGQKG
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
NYAEADLASAQAAYLRGDAKTARELAARAKTRFPVGSPGWVKADDIVAAKMPGQK
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]