| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is 192290971
Identifier: 192290971
GI number: 192290971
Start: 2797489
End: 2798109
Strand: Reverse
Name: 192290971
Synonym: Rpal_2588
Alternate gene names: NA
Gene position: 2798109-2797489 (Counterclockwise)
Preceding gene: 192290972
Following gene: 192290969
Centisome position: 48.71
GC content: 71.34
Gene sequence:
>621_bases ATGACCGCCTCCGATGAAGCCGGCCAGCTGCGATCGCTGATCGCAGCACTGCAGCGCTCCTTTGCCGATCCGGGCGGTGC CGATGACGCCGCCAGGGCCGAGATCCGCCGCGTCGAAGCACTACTTGCCTCGGCCCCCACGGAGGCTGCGGTTCTGCAGC CGACGCATCACCCGCTGACGCGGCACCTGCCGGCGGTGCTCGATCTCGCCGAGGCCACAGCGCCCGAGGTCGCAGCCGCC CTCCGCCCCATCGCGCAGCAGCTGCCGTGGCGTTACGGCTACACGCCGCGAGACGATGCGCCCGGCCTCGAAGGCGCCAT GGGGTGGGCCGAACTGATTGGCCCGCTGGCGCCGATCGTCAGCCGCGAGGTCTGCTTCGGCCTCACCTTGATCGGCCCGC GGACCTACTATCCGCCGCACCGCCATCCCGCGGTCGAGCTGTATCGGATCGTGGTCGGCCATCCGCACTGGACCGTCGCC ACCGACACCGCACTGCGCCGGCCGGGCGACGCCATCCTGCACGCCAGCGACGTCGTCCACGCCATGCGCGCCGACAACGA GCCGCTGCTGGCGATCTACTCATGGACCGGCGACGTCGACACCCCGTCGCGGTGGGTGTGA
Upstream 100 bases:
>100_bases CGCCGGCGAACAGCTCGGCGCAGTCGCAGCGTGGGAGGCGCATCGCAGCGGCCTTCGGATCGGCCACACCTATGTGGTGC TGCAATCGGGCCTGGGCTGA
Downstream 100 bases:
>100_bases CAGCTAACGGGAAGGATCGTCGCCAAAACAGGCAAGGCTCATCGCTGTTTGAGCGCGATCCTGGCATCGGCTCCGCGGAG GGTGCGGTACGCAAAGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Regulator Protein
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MTASDEAGQLRSLIAALQRSFADPGGADDAARAEIRRVEALLASAPTEAAVLQPTHHPLTRHLPAVLDLAEATAPEVAAA LRPIAQQLPWRYGYTPRDDAPGLEGAMGWAELIGPLAPIVSREVCFGLTLIGPRTYYPPHRHPAVELYRIVVGHPHWTVA TDTALRRPGDAILHASDVVHAMRADNEPLLAIYSWTGDVDTPSRWV
Sequences:
>Translated_206_residues MTASDEAGQLRSLIAALQRSFADPGGADDAARAEIRRVEALLASAPTEAAVLQPTHHPLTRHLPAVLDLAEATAPEVAAA LRPIAQQLPWRYGYTPRDDAPGLEGAMGWAELIGPLAPIVSREVCFGLTLIGPRTYYPPHRHPAVELYRIVVGHPHWTVA TDTALRRPGDAILHASDVVHAMRADNEPLLAIYSWTGDVDTPSRWV >Mature_205_residues TASDEAGQLRSLIAALQRSFADPGGADDAARAEIRRVEALLASAPTEAAVLQPTHHPLTRHLPAVLDLAEATAPEVAAAL RPIAQQLPWRYGYTPRDDAPGLEGAMGWAELIGPLAPIVSREVCFGLTLIGPRTYYPPHRHPAVELYRIVVGHPHWTVAT DTALRRPGDAILHASDVVHAMRADNEPLLAIYSWTGDVDTPSRWV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22287; Mature: 22156
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASDEAGQLRSLIAALQRSFADPGGADDAARAEIRRVEALLASAPTEAAVLQPTHHPLT CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHH RHLPAVLDLAEATAPEVAAALRPIAQQLPWRYGYTPRDDAPGLEGAMGWAELIGPLAPIV HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SREVCFGLTLIGPRTYYPPHRHPAVELYRIVVGHPHWTVATDTALRRPGDAILHASDVVH HHHHHHCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHH AMRADNEPLLAIYSWTGDVDTPSRWV HHHCCCCCEEEEEECCCCCCCCCCCC >Mature Secondary Structure TASDEAGQLRSLIAALQRSFADPGGADDAARAEIRRVEALLASAPTEAAVLQPTHHPLT CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHH RHLPAVLDLAEATAPEVAAALRPIAQQLPWRYGYTPRDDAPGLEGAMGWAELIGPLAPIV HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SREVCFGLTLIGPRTYYPPHRHPAVELYRIVVGHPHWTVATDTALRRPGDAILHASDVVH HHHHHHCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHH AMRADNEPLLAIYSWTGDVDTPSRWV HHHCCCCCEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA