| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290717
Identifier: 192290717
GI number: 192290717
Start: 2512768
End: 2513784
Strand: Reverse
Name: 192290717
Synonym: Rpal_2329
Alternate gene names: NA
Gene position: 2513784-2512768 (Counterclockwise)
Preceding gene: 192290721
Following gene: 192290713
Centisome position: 43.76
GC content: 67.45
Gene sequence:
>1017_bases ATGGGATGGGCATGGCTCAGCTGGTTGTTCAGCGGGAAGCGGCGCTTGGTGCCGGCTGCAGGGCTGCGCTCGGCTGTCAC CGAGGACAATTCCGCGCTGGCGGAAGACTGGGGGAGAGGATTTGCTGCGCCTGTTCGCCCGACGACGCAGACGACGCGAA CGCTGCCCCCGGCCGCTTCATCGGCGCAATCGCGCCGACCGCCGGGCCCGCGCGGCAAGTGGTACGCCAAGAACGGCACC ACCCGCACCGCCGGCCCGTTCGAGACCGAGACCGAAGGCCAAGGTGGCGATGGCCAGCGACGGCGTCGACGATGCCGCGC AGTGGGTCGAGCAGAACGAAGGCTCGAGCGATCAGCAGCCGACCGGCGATGCCGCGCCGGCGGCCACGCCCGGCACCGGG GCCTGATCGATGCCGCTGGTTCTGGAAGACGACACGGGGCGCGCCGAAGCGGAGAGCTACGTCAGCGCCGCGAATTGCGC GTCCTATGCCGTCTCACGCGGTTTCGCGTTCGACATCACCGACACGGTGGCGACGGAAGCGACGTTGCGCCGCGCCACTG CCTTTGTGGATGCCTATCGGGCGCGGCTCCCAGGTTATCGGGTCAAGCGTCGCGGTCAGGCCTTGGCGTGGCCGCGCGCC GCGGCATACAGCGACGTGCCGTTGGGGGCCGCAGTCCATGCGCCTATTGCGGCGGGGCCTTCAACCCGGGCTACGACCAC ATCCCATCCGACGAGGTTCCGGCGGAGATCATTCGCGCAACCTGCGAAACCGCGGTGCGCGAACTTGCCGCGCCTAGCTC GCTGATGCAAGATCTCGAGCGAGGCGGCGCGATCAGCAGATCACGGTCGGCTCGGTATCGATCACCTAAGCCGGCAGCGC ACGGGCTGGCACCACCCACCCGATCATCGAAACCATCCTGGCTCCAATACTCGTTGCGGGAAGCGAGAGGCTCTTCGGAA CGATATCGCGACGTTAATCGTCGGAGAACTTCACGTCGAGGAAGGCCCCTAAAGTAG
Upstream 100 bases:
>100_bases AATGTGGCGCTTCGCCCCGCGACCTTGGGCTTCGCGACGCGCGGATGCGTCAAATCCTAGCGACATTGCGTTGGCAACTC AGGCACGTCCAGGTGACGAC
Downstream 100 bases:
>100_bases CGCTGATTCGTGGTTGTGCACGAGGCAAGCTCGGGCTCTGTTGCGTTTGCGAGAGCAACTTCGACGATTTCGACATCGTC AGCGAACTGTGGTCCATCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MGWAWLSWLFSGKRRLVPAAGLRSAVTEDNSALAEDWGRGFAAPVRPTTQTTRTLPPAASSAQSRRPPGPRGKWYAKNGT TRTAGPFETETEGQGGDGQRRRRRCRAVGRAERRLERSAADRRCRAGGHARHRGLIDAAGSGRRHGARRSGELRQRRELR VLCRLTRFRVRHHRHGGDGSDVAPRHCLCGCLSGAAPRLSGQASRSGLGVAARRGIQRRAVGGRSPCAYCGGAFNPGYDH IPSDEVPAEIIRATCETAVRELAAPSSLMQDLERGGAISRSRSARYRSPKPAAHGLAPPTRSSKPSWLQYSLREARGSSE RYRDVNRRRTSRRGRPLK
Sequences:
>Translated_338_residues MGWAWLSWLFSGKRRLVPAAGLRSAVTEDNSALAEDWGRGFAAPVRPTTQTTRTLPPAASSAQSRRPPGPRGKWYAKNGT TRTAGPFETETEGQGGDGQRRRRRCRAVGRAERRLERSAADRRCRAGGHARHRGLIDAAGSGRRHGARRSGELRQRRELR VLCRLTRFRVRHHRHGGDGSDVAPRHCLCGCLSGAAPRLSGQASRSGLGVAARRGIQRRAVGGRSPCAYCGGAFNPGYDH IPSDEVPAEIIRATCETAVRELAAPSSLMQDLERGGAISRSRSARYRSPKPAAHGLAPPTRSSKPSWLQYSLREARGSSE RYRDVNRRRTSRRGRPLK >Mature_337_residues GWAWLSWLFSGKRRLVPAAGLRSAVTEDNSALAEDWGRGFAAPVRPTTQTTRTLPPAASSAQSRRPPGPRGKWYAKNGTT RTAGPFETETEGQGGDGQRRRRRCRAVGRAERRLERSAADRRCRAGGHARHRGLIDAAGSGRRHGARRSGELRQRRELRV LCRLTRFRVRHHRHGGDGSDVAPRHCLCGCLSGAAPRLSGQASRSGLGVAARRGIQRRAVGGRSPCAYCGGAFNPGYDHI PSDEVPAEIIRATCETAVRELAAPSSLMQDLERGGAISRSRSARYRSPKPAAHGLAPPTRSSKPSWLQYSLREARGSSER YRDVNRRRTSRRGRPLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37087; Mature: 36956
Theoretical pI: Translated: 12.20; Mature: 12.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGWAWLSWLFSGKRRLVPAAGLRSAVTEDNSALAEDWGRGFAAPVRPTTQTTRTLPPAAS CCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHCCCCCCCC SAQSRRPPGPRGKWYAKNGTTRTAGPFETETEGQGGDGQRRRRRCRAVGRAERRLERSAA CHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH DRRCRAGGHARHRGLIDAAGSGRRHGARRSGELRQRRELRVLCRLTRFRVRHHRHGGDGS HHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DVAPRHCLCGCLSGAAPRLSGQASRSGLGVAARRGIQRRAVGGRSPCAYCGGAFNPGYDH CCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC IPSDEVPAEIIRATCETAVRELAAPSSLMQDLERGGAISRSRSARYRSPKPAAHGLAPPT CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCC RSSKPSWLQYSLREARGSSERYRDVNRRRTSRRGRPLK CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GWAWLSWLFSGKRRLVPAAGLRSAVTEDNSALAEDWGRGFAAPVRPTTQTTRTLPPAAS CHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHCCCCCCCC SAQSRRPPGPRGKWYAKNGTTRTAGPFETETEGQGGDGQRRRRRCRAVGRAERRLERSAA CHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH DRRCRAGGHARHRGLIDAAGSGRRHGARRSGELRQRRELRVLCRLTRFRVRHHRHGGDGS HHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DVAPRHCLCGCLSGAAPRLSGQASRSGLGVAARRGIQRRAVGGRSPCAYCGGAFNPGYDH CCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC IPSDEVPAEIIRATCETAVRELAAPSSLMQDLERGGAISRSRSARYRSPKPAAHGLAPPT CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCC RSSKPSWLQYSLREARGSSERYRDVNRRRTSRRGRPLK CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA