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The map label for this gene is ycdC [C]

Identifier: 192290568

GI number: 192290568

Start: 2358399

End: 2359031

Strand: Reverse

Name: ycdC [C]

Synonym: Rpal_2177

Alternate gene names: 192290568

Gene position: 2359031-2358399 (Counterclockwise)

Preceding gene: 192290572

Following gene: 192290567

Centisome position: 41.07

GC content: 63.67

Gene sequence:

>633_bases
ATGGTCAGGGTTCGGACGGAAGCCAAGCGGGACGCGATCCTCGACACGGCGGCCGAGGTGTTTAAGGAACGCGGCCTCGA
AGGCGCTTCGATGTCGGAAATCGCCAGCAGGCTCGGCGGCTCGAAAGCGACGCTGTACGGCTACTTCCCGTCCAAGGAAG
AACTGTTCGTACACGTCGCGCTGCGCGTTGCAGGCAAGCAGATCCTCGGCATGTACGAAAATCTCGAGGCGCGCGCCACC
GACGATCCGGAGCGCGTGCTCACCGAGTTCGGCAAGAAACTACTGCATCGCGTGCTGGTCGAGGACGCCACCACTGCCCA
CCGCCTTGCGGTGGCGCACGGACGGATCGGCAATCTCGGTCGGATTTTCTACGACGCGGGTCCTGGCAAAGCGGTCGAGG
CGTTCACCCGCTATATCGACGCCGCAACCAAAGCTGGCCGCCTACATGCTGCCAATCCGGGTGCGGCGGCGCATCACCTG
TTGGCGCTACTCGAATCCGAGATCGCTTATCGCCGCAGGCTGCAATTTGACGACGCCATCTCCGCCAGCGAGATCGATCA
ATGCGTCGGCCGTGCCGTCACGGTGTTCCTGGCTGCCTACGCGGCGCCGCGAACGAGCGACAAAGCGTCCTGA

Upstream 100 bases:

>100_bases
AACGTACGGTTATTATTCGAACGCAAGACTGTCAATACGACCGTACGTTCAGTATGATCCCGGAGGACGCCGGACGGATT
TGACGAGGCGATGGAGAGCG

Downstream 100 bases:

>100_bases
GTTCGTTCAGCGTCCCCTCGCCTTCGATTCAAATGCGACGGGCGGGTTGATGGGCCACAATGCCGACGCGCGGCAGGATT
TGCTACGACGCCCGCATTGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcription Regulator Protein; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcription Regulator Protein TetR Family; Transcriptional Regulator Protein Tetr Family; TetR-Like Virulence Regulator; Regulatory Protein Tetr; Transcriptional Regulator Tetr Family; Transcription Regulator Protein Tetr Family; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MVRVRTEAKRDAILDTAAEVFKERGLEGASMSEIASRLGGSKATLYGYFPSKEELFVHVALRVAGKQILGMYENLEARAT
DDPERVLTEFGKKLLHRVLVEDATTAHRLAVAHGRIGNLGRIFYDAGPGKAVEAFTRYIDAATKAGRLHAANPGAAAHHL
LALLESEIAYRRRLQFDDAISASEIDQCVGRAVTVFLAAYAAPRTSDKAS

Sequences:

>Translated_210_residues
MVRVRTEAKRDAILDTAAEVFKERGLEGASMSEIASRLGGSKATLYGYFPSKEELFVHVALRVAGKQILGMYENLEARAT
DDPERVLTEFGKKLLHRVLVEDATTAHRLAVAHGRIGNLGRIFYDAGPGKAVEAFTRYIDAATKAGRLHAANPGAAAHHL
LALLESEIAYRRRLQFDDAISASEIDQCVGRAVTVFLAAYAAPRTSDKAS
>Mature_210_residues
MVRVRTEAKRDAILDTAAEVFKERGLEGASMSEIASRLGGSKATLYGYFPSKEELFVHVALRVAGKQILGMYENLEARAT
DDPERVLTEFGKKLLHRVLVEDATTAHRLAVAHGRIGNLGRIFYDAGPGKAVEAFTRYIDAATKAGRLHAANPGAAAHHL
LALLESEIAYRRRLQFDDAISASEIDQCVGRAVTVFLAAYAAPRTSDKAS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22825; Mature: 22825

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRVRTEAKRDAILDTAAEVFKERGLEGASMSEIASRLGGSKATLYGYFPSKEELFVHVA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
LRVAGKQILGMYENLEARATDDPERVLTEFGKKLLHRVLVEDATTAHRLAVAHGRIGNLG
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
RIFYDAGPGKAVEAFTRYIDAATKAGRLHAANPGAAAHHLLALLESEIAYRRRLQFDDAI
EEEEECCCCHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
SASEIDQCVGRAVTVFLAAYAAPRTSDKAS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVRVRTEAKRDAILDTAAEVFKERGLEGASMSEIASRLGGSKATLYGYFPSKEELFVHVA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
LRVAGKQILGMYENLEARATDDPERVLTEFGKKLLHRVLVEDATTAHRLAVAHGRIGNLG
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
RIFYDAGPGKAVEAFTRYIDAATKAGRLHAANPGAAAHHLLALLESEIAYRRRLQFDDAI
EEEEECCCCHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
SASEIDQCVGRAVTVFLAAYAAPRTSDKAS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA