| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is yxeI [H]
Identifier: 192290477
GI number: 192290477
Start: 2257576
End: 2258643
Strand: Reverse
Name: yxeI [H]
Synonym: Rpal_2085
Alternate gene names: 192290477
Gene position: 2258643-2257576 (Counterclockwise)
Preceding gene: 192290491
Following gene: 192290476
Centisome position: 39.32
GC content: 63.67
Gene sequence:
>1068_bases ATGATCGGTTTCAAGCGACGTCTCCTCACCACCTGCGCCGGCGCACTGGCCATCGCGGGATCGTTACTGCCGCCGGTCGC CGACGCCTGCACCCGTCTAGTTTATCTCGGCGCCGACAATCAGGTGATCACGGCGCGATCGATGGATTGGGCGCGCGACA TCGGCACCAATCTCTGGATCTTTCCACGCGGCATCAAGCGCTCCGGCGAGGCCGGCCCCAATTCGGCACAGTGGACCGCA CGCTACGGCAGCGTGATCGCGTCGGCCTATGACGTCGCGACTTCGGACGGAATCAACGAGGCCGGGCTGGTCGCCAACGT GCTGTGGCTGGCGGAATCGCAATATCCGCCGTTCGACGGCTCCAAGCCGGGGCTGGCGCTGTCGCTGTGGCCTCAATATG CGCTCGACAATTTCGCCACCGTCGCCGAAGCGGTCGAGGCGCTGGCGAAGGAACCGTTCACGGTCGTCACAGACAAGATG CCCGGTGAGCAGCGCCTTGCCACTGTGCACCTGGCGCTGTCGGACGCCTCCGGTGACAGCGCCATCATCGAATACATCGA CGGCAAGCAGGTGATCCACCACGGCCGGCAATACCAAGTGATGACCAATTCGCCGACCTTCGATCAGCAGCTCGCGCTGA ATTCGTACTGGCAGCAGATCGGTGGCACGGTGATGCTCCCAGGCACCAACCGCGCGGCCGATCGTTTCGCGCGGGCCTCG TTCTATGTCGGCGCAATTCCTAAAACGCCCGACCCGGTGGAATCGATCGCCGCCGCGTTCAGCGTGATCCGCAACGCGTC GGTGCCGTTCGGCATCTCGACGCCAGATCAGCCGAACATCTCGTCGACCCGCTGGCGCAGCGTCGCCGACCACAAGCGCA AACTGTACTTCTTCGAATCCGCGCTGACGCCCAACGTGTTCTGGGTCGATCTCACCAAGATCGAGTTCGCGGCCGACAAG GGCGTGGTGAAAAAGCTCGACCTCGGCCCCGGCCAGAGCAACGTCTTCTCGGGCGAGGTGCACGATCGCTTCAAGCCGGC GGAGCCGTTCAAGTTTCAGGGACTGTGA
Upstream 100 bases:
>100_bases CGTACCGCTGTCAACGCACGGATTCGCGGTATGATCACGTCATGGGAAGAATGTTCCGCATAGCAGAATACACCCACCCT CGGGGTATCGGAGGTCCAAC
Downstream 100 bases:
>100_bases GGCTGCGCTGAAAGCGCAGCAACACAATCAAGCTGCGCTTTCCGAGAATGGGCCACCAACATGGACCATCAGCGGCCTAG CGCCTACATCGTCCGGGTAC
Product: Choloylglycine hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MIGFKRRLLTTCAGALAIAGSLLPPVADACTRLVYLGADNQVITARSMDWARDIGTNLWIFPRGIKRSGEAGPNSAQWTA RYGSVIASAYDVATSDGINEAGLVANVLWLAESQYPPFDGSKPGLALSLWPQYALDNFATVAEAVEALAKEPFTVVTDKM PGEQRLATVHLALSDASGDSAIIEYIDGKQVIHHGRQYQVMTNSPTFDQQLALNSYWQQIGGTVMLPGTNRAADRFARAS FYVGAIPKTPDPVESIAAAFSVIRNASVPFGISTPDQPNISSTRWRSVADHKRKLYFFESALTPNVFWVDLTKIEFAADK GVVKKLDLGPGQSNVFSGEVHDRFKPAEPFKFQGL
Sequences:
>Translated_355_residues MIGFKRRLLTTCAGALAIAGSLLPPVADACTRLVYLGADNQVITARSMDWARDIGTNLWIFPRGIKRSGEAGPNSAQWTA RYGSVIASAYDVATSDGINEAGLVANVLWLAESQYPPFDGSKPGLALSLWPQYALDNFATVAEAVEALAKEPFTVVTDKM PGEQRLATVHLALSDASGDSAIIEYIDGKQVIHHGRQYQVMTNSPTFDQQLALNSYWQQIGGTVMLPGTNRAADRFARAS FYVGAIPKTPDPVESIAAAFSVIRNASVPFGISTPDQPNISSTRWRSVADHKRKLYFFESALTPNVFWVDLTKIEFAADK GVVKKLDLGPGQSNVFSGEVHDRFKPAEPFKFQGL >Mature_355_residues MIGFKRRLLTTCAGALAIAGSLLPPVADACTRLVYLGADNQVITARSMDWARDIGTNLWIFPRGIKRSGEAGPNSAQWTA RYGSVIASAYDVATSDGINEAGLVANVLWLAESQYPPFDGSKPGLALSLWPQYALDNFATVAEAVEALAKEPFTVVTDKM PGEQRLATVHLALSDASGDSAIIEYIDGKQVIHHGRQYQVMTNSPTFDQQLALNSYWQQIGGTVMLPGTNRAADRFARAS FYVGAIPKTPDPVESIAAAFSVIRNASVPFGISTPDQPNISSTRWRSVADHKRKLYFFESALTPNVFWVDLTKIEFAADK GVVKKLDLGPGQSNVFSGEVHDRFKPAEPFKFQGL
Specific function: Unknown
COG id: COG3049
COG function: function code M; Penicillin V acylase and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase C59 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003199 [H]
Pfam domain/function: PF02275 CBAH [H]
EC number: NA
Molecular weight: Translated: 38558; Mature: 38558
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGFKRRLLTTCAGALAIAGSLLPPVADACTRLVYLGADNQVITARSMDWARDIGTNLWI CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEECCCCCEEEECCCHHHHHCCCCEEE FPRGIKRSGEAGPNSAQWTARYGSVIASAYDVATSDGINEAGLVANVLWLAESQYPPFDG EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC SKPGLALSLWPQYALDNFATVAEAVEALAKEPFTVVTDKMPGEQRLATVHLALSDASGDS CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHEEEEEEEEECCCCCC AIIEYIDGKQVIHHGRQYQVMTNSPTFDQQLALNSYWQQIGGTVMLPGTNRAADRFARAS EEEEECCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHH FYVGAIPKTPDPVESIAAAFSVIRNASVPFGISTPDQPNISSTRWRSVADHKRKLYFFES EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEEC ALTPNVFWVDLTKIEFAADKGVVKKLDLGPGQSNVFSGEVHDRFKPAEPFKFQGL CCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCEECCCHHHCCCCCCCCCCCCC >Mature Secondary Structure MIGFKRRLLTTCAGALAIAGSLLPPVADACTRLVYLGADNQVITARSMDWARDIGTNLWI CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEECCCCCEEEECCCHHHHHCCCCEEE FPRGIKRSGEAGPNSAQWTARYGSVIASAYDVATSDGINEAGLVANVLWLAESQYPPFDG EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC SKPGLALSLWPQYALDNFATVAEAVEALAKEPFTVVTDKMPGEQRLATVHLALSDASGDS CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHEEEEEEEEECCCCCC AIIEYIDGKQVIHHGRQYQVMTNSPTFDQQLALNSYWQQIGGTVMLPGTNRAADRFARAS EEEEECCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHH FYVGAIPKTPDPVESIAAAFSVIRNASVPFGISTPDQPNISSTRWRSVADHKRKLYFFES EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEEC ALTPNVFWVDLTKIEFAADKGVVKKLDLGPGQSNVFSGEVHDRFKPAEPFKFQGL CCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCEECCCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]