| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is fct [H]
Identifier: 192290475
GI number: 192290475
Start: 2252218
End: 2254533
Strand: Reverse
Name: fct [H]
Synonym: Rpal_2082
Alternate gene names: 192290475
Gene position: 2254533-2252218 (Counterclockwise)
Preceding gene: 192290476
Following gene: 192290474
Centisome position: 39.25
GC content: 65.07
Gene sequence:
>2316_bases ATGAAATTGGGTCTTGCCGGCGTGAATGCCGGGCGCAGTTCTATGGTCAACACGCTGCTGCTGACGAGCGCGCTGATCGC ACCGGCGGTGTGGCCGTCATCGCAAGCCGCCGCACAGGATGCCAAACCGCAAGCGACCCAATTGCCCGCCGTCGAAGTCG CCGCCCCGGAGGCGAGCCGGCGTCAGACGCAGCCCGCGCGCAACCGGAATCGTGCCGCCGCAGGCCCGTCACGACGCTCC GCGCAGCGCGCCGCGCAAGCGCCGCAGCCGGCACAACCGGTGCAGCGCCCCGTGTTCGAACGCGGCACCGATCCGGTGCC GGGCTTCGTGCCGAGCGTGAGCGCCAGCGGCACCAAGACCGACACCAAGCTGATCGAGACGCCGCAATCGGTTTCCGTGA TCAGCCGCGACAATCTCGATGCGCGCGGCATCGACACCGTCGCCCAGGCGCTGCAATATACCGCCGGAGTCGCGGTGCAG ACGTTCGGCGGCGATCCCCGCTACGATCAGGCGCGTATCCGCGGCTTTGAAACCAACGGCTTCTCCAATTTCCGCGACGG CCTGCGCGACACCGCGAATGGCTCGGCCTATTTCTCGGTGTTCCGCAACGAGCCCTACGGCGTGCAGCGCATCGACGTCG TCAAGGGCCCGAGCTCGGTGATGTACGGTCAGAGCCCGCCCGGCGGCCTGATCGACCTGATCAGCAAGCGCCCGACCGAC CACGCGTTCGGCGAAGTGGTCGGCCTCGTCGGCACCGCCGACCGGCTGCAGGGTGCGTTCGACGTCGGCGGTCCGATCGA CAAGGACAAGACCGTGCTCTATCGCCTCACCGGCGTGCTGCGGGATTCCGACGCGCAGGTCGCGAAGTTCTCCGACAAGG TCAAGGACGACCGCGCCTATATCGCGCCGGCGGTGACCTGGCGGCCCACCAACGACACCACGCTGACGATCCTCAGCGAC TATCAGCACGACGTTACCGGCATCGCCAGCCCGCTGTCGGTCGCAACGGTCCGCGGCGGCAAGGTCGTCAACATGCGCGC GCTGCCGCTGTTTCTCGGCGATCCGTCGTACAACACCTTCGACCAGACTCAGTACCGCGTCGGCTATCAGTTCGAGCACC GCTTCAGCGACGATCTGATCGTGCGCTCGCGGGCGCGCTACGGCCACGTCGATCTGGAGTATCGTTCCATCACCCAGGCC GGCACGCCGCTCGACACCCAAACCGTGTTTCCACGAAACGCGCGCCGCGTGCTCGAAAACAGCGACAGTTTCGGCATCGA CAACCACGTCATCGCCAAGACCTGGACCGGCCCGCTGCAGCACACCGTTCTGATCGGCACCGACTATCAGGCGTTCAAGC TCGACGGCGAGTCGTTCGGCGGCTTGGCGCCGTCGATCGACGTGCTCAATCCGGTCTACGGCCAGCCGGTGGCGATGCCG ACGCTCCGGCTGCAGAGCTACAAGCAGAACCTGAACCAGGCCGGCGTCTATCTGCAGGATCAGATCAAGCTGCAGAACTG GATCCTGACGCTCGGCGGCCGCTACGACGCGGCCCAGCAGACCATCCTCAACCGCCTCACCGGCGTGCCGCAGCCGAACG ACGACACCGCCTTCACCAAGCGCGCCGGCCTGACCTATCTGTTCGACAACGGCCTCGCGCCCTATGTCAGCTATTCCGAA TCGTTTCTGCCTACAGGGGGCGTCGATTTCAACTCCAACGCCTTCAAGCCCACCAAGGGCAAGCAATACGAGGGCGGCAT CAAGTTCCAGCCGAACCGCGATCTGCTGTTCACCGCGGCGGTGTTCGACCTCACCCAGGACAATGTGCTGACCGCCGATC CGAACCATCTGAACTACAATATCCAGACCGGCCAGGTGAATTCGCGCGGCCTGGAGCTGGAGATGTTGGCCAAGCCGATG CCGGGCCTCAATCTTCTGGCGAGCTACACGCTGCAAAATCTCAAGAATACCCAGAGCAACAACGGCGACGTCGGCAAGAT GCCGGTGCTGATCCCCCGCCACATGGCGTCGGCCTTCGCCGACTACACGCTGCAGAGCGGACCGCTGGCCGGCTGGGGCT TCGGCGCCGGCTTCCGCTATATCGGCGAGTCCTACATGGACATCCTCAACACGCTGACCAACGACGCCTATACGGTGTTC GACGCCGGGCTGCATTATCGCCAGCCGAAGGGCATCAATCTGGCGCTCAACGTCAAGAACATCGTCAACAAGGACAACGC GATGTGCACCGCCACCGGCGGCTGCCAGTACATCTCCCCGCGGGTGATCACCGCGACCGCGAGCTATCGCTGGTGA
Upstream 100 bases:
>100_bases TTTGATCGATTCCAAACTGGCTTCGCGCAAAAGCTTCGCAGCACCGTTGCTACACGTTACCGTATCCGATTACTTCGCTC CCTCGATTTGGGGGTAAGCG
Downstream 100 bases:
>100_bases CCGGGACGCGCGCCCTCAGGATCTGGAGCAAGGTCCACACCTGGACCTCGCTTATCAGCATGCTGTTCCTGCTGATGCTG TGCCTCACCGGTCTGCCGCT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MKLGLAGVNAGRSSMVNTLLLTSALIAPAVWPSSQAAAQDAKPQATQLPAVEVAAPEASRRQTQPARNRNRAAAGPSRRS AQRAAQAPQPAQPVQRPVFERGTDPVPGFVPSVSASGTKTDTKLIETPQSVSVISRDNLDARGIDTVAQALQYTAGVAVQ TFGGDPRYDQARIRGFETNGFSNFRDGLRDTANGSAYFSVFRNEPYGVQRIDVVKGPSSVMYGQSPPGGLIDLISKRPTD HAFGEVVGLVGTADRLQGAFDVGGPIDKDKTVLYRLTGVLRDSDAQVAKFSDKVKDDRAYIAPAVTWRPTNDTTLTILSD YQHDVTGIASPLSVATVRGGKVVNMRALPLFLGDPSYNTFDQTQYRVGYQFEHRFSDDLIVRSRARYGHVDLEYRSITQA GTPLDTQTVFPRNARRVLENSDSFGIDNHVIAKTWTGPLQHTVLIGTDYQAFKLDGESFGGLAPSIDVLNPVYGQPVAMP TLRLQSYKQNLNQAGVYLQDQIKLQNWILTLGGRYDAAQQTILNRLTGVPQPNDDTAFTKRAGLTYLFDNGLAPYVSYSE SFLPTGGVDFNSNAFKPTKGKQYEGGIKFQPNRDLLFTAAVFDLTQDNVLTADPNHLNYNIQTGQVNSRGLELEMLAKPM PGLNLLASYTLQNLKNTQSNNGDVGKMPVLIPRHMASAFADYTLQSGPLAGWGFGAGFRYIGESYMDILNTLTNDAYTVF DAGLHYRQPKGINLALNVKNIVNKDNAMCTATGGCQYISPRVITATASYRW
Sequences:
>Translated_771_residues MKLGLAGVNAGRSSMVNTLLLTSALIAPAVWPSSQAAAQDAKPQATQLPAVEVAAPEASRRQTQPARNRNRAAAGPSRRS AQRAAQAPQPAQPVQRPVFERGTDPVPGFVPSVSASGTKTDTKLIETPQSVSVISRDNLDARGIDTVAQALQYTAGVAVQ TFGGDPRYDQARIRGFETNGFSNFRDGLRDTANGSAYFSVFRNEPYGVQRIDVVKGPSSVMYGQSPPGGLIDLISKRPTD HAFGEVVGLVGTADRLQGAFDVGGPIDKDKTVLYRLTGVLRDSDAQVAKFSDKVKDDRAYIAPAVTWRPTNDTTLTILSD YQHDVTGIASPLSVATVRGGKVVNMRALPLFLGDPSYNTFDQTQYRVGYQFEHRFSDDLIVRSRARYGHVDLEYRSITQA GTPLDTQTVFPRNARRVLENSDSFGIDNHVIAKTWTGPLQHTVLIGTDYQAFKLDGESFGGLAPSIDVLNPVYGQPVAMP TLRLQSYKQNLNQAGVYLQDQIKLQNWILTLGGRYDAAQQTILNRLTGVPQPNDDTAFTKRAGLTYLFDNGLAPYVSYSE SFLPTGGVDFNSNAFKPTKGKQYEGGIKFQPNRDLLFTAAVFDLTQDNVLTADPNHLNYNIQTGQVNSRGLELEMLAKPM PGLNLLASYTLQNLKNTQSNNGDVGKMPVLIPRHMASAFADYTLQSGPLAGWGFGAGFRYIGESYMDILNTLTNDAYTVF DAGLHYRQPKGINLALNVKNIVNKDNAMCTATGGCQYISPRVITATASYRW >Mature_771_residues MKLGLAGVNAGRSSMVNTLLLTSALIAPAVWPSSQAAAQDAKPQATQLPAVEVAAPEASRRQTQPARNRNRAAAGPSRRS AQRAAQAPQPAQPVQRPVFERGTDPVPGFVPSVSASGTKTDTKLIETPQSVSVISRDNLDARGIDTVAQALQYTAGVAVQ TFGGDPRYDQARIRGFETNGFSNFRDGLRDTANGSAYFSVFRNEPYGVQRIDVVKGPSSVMYGQSPPGGLIDLISKRPTD HAFGEVVGLVGTADRLQGAFDVGGPIDKDKTVLYRLTGVLRDSDAQVAKFSDKVKDDRAYIAPAVTWRPTNDTTLTILSD YQHDVTGIASPLSVATVRGGKVVNMRALPLFLGDPSYNTFDQTQYRVGYQFEHRFSDDLIVRSRARYGHVDLEYRSITQA GTPLDTQTVFPRNARRVLENSDSFGIDNHVIAKTWTGPLQHTVLIGTDYQAFKLDGESFGGLAPSIDVLNPVYGQPVAMP TLRLQSYKQNLNQAGVYLQDQIKLQNWILTLGGRYDAAQQTILNRLTGVPQPNDDTAFTKRAGLTYLFDNGLAPYVSYSE SFLPTGGVDFNSNAFKPTKGKQYEGGIKFQPNRDLLFTAAVFDLTQDNVLTADPNHLNYNIQTGQVNSRGLELEMLAKPM PGLNLLASYTLQNLKNTQSNNGDVGKMPVLIPRHMASAFADYTLQSGPLAGWGFGAGFRYIGESYMDILNTLTNDAYTVF DAGLHYRQPKGINLALNVKNIVNKDNAMCTATGGCQYISPRVITATASYRW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=725, Percent_Identity=35.7241379310345, Blast_Score=384, Evalue=1e-108, Organism=Escherichia coli, GI1787024, Length=746, Percent_Identity=24.9329758713137, Blast_Score=109, Evalue=7e-25, Organism=Escherichia coli, GI1787344, Length=715, Percent_Identity=21.3986013986014, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83919; Mature: 83919
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLGLAGVNAGRSSMVNTLLLTSALIAPAVWPSSQAAAQDAKPQATQLPAVEVAAPEASR CCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHCCCEEEEECCCHHH RQTQPARNRNRAAAGPSRRSAQRAAQAPQPAQPVQRPVFERGTDPVPGFVPSVSASGTKT HCCCCHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC DTKLIETPQSVSVISRDNLDARGIDTVAQALQYTAGVAVQTFGGDPRYDQARIRGFETNG CHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHEEEEECCC FSNFRDGLRDTANGSAYFSVFRNEPYGVQRIDVVKGPSSVMYGQSPPGGLIDLISKRPTD CHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEECCCCCCCHHHHHHHCCCCC HAFGEVVGLVGTADRLQGAFDVGGPIDKDKTVLYRLTGVLRDSDAQVAKFSDKVKDDRAY HHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHCCCCEE IAPAVTWRPTNDTTLTILSDYQHDVTGIASPLSVATVRGGKVVNMRALPLFLGDPSYNTF EEEEEEEECCCCCEEEEEECCCCHHHHCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCC DQTQYRVGYQFEHRFSDDLIVRSRARYGHVDLEYRSITQAGTPLDTQTVFPRNARRVLEN CCCEEEECEEEECCCCCCCEEECCCCCCCEEEEEHHHHCCCCCCCCCCCCCCHHHHHHCC SDSFGIDNHVIAKTWTGPLQHTVLIGTDYQAFKLDGESFGGLAPSIDVLNPVYGQPVAMP CCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCH TLRLQSYKQNLNQAGVYLQDQIKLQNWILTLGGRYDAAQQTILNRLTGVPQPNDDTAFTK HHHHHHHHHHHHHCCCEEEEHEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHH RAGLTYLFDNGLAPYVSYSESFLPTGGVDFNSNAFKPTKGKQYEGGIKFQPNRDLLFTAA HCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEE VFDLTQDNVLTADPNHLNYNIQTGQVNSRGLELEMLAKPMPGLNLLASYTLQNLKNTQSN EEECCCCCEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC NGDVGKMPVLIPRHMASAFADYTLQSGPLAGWGFGAGFRYIGESYMDILNTLTNDAYTVF CCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE DAGLHYRQPKGINLALNVKNIVNKDNAMCTATGGCQYISPRVITATASYRW ECCCCCCCCCCCEEEEEHHHHCCCCCCEEEECCCCEECCCEEEEEECCCCC >Mature Secondary Structure MKLGLAGVNAGRSSMVNTLLLTSALIAPAVWPSSQAAAQDAKPQATQLPAVEVAAPEASR CCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHCCCEEEEECCCHHH RQTQPARNRNRAAAGPSRRSAQRAAQAPQPAQPVQRPVFERGTDPVPGFVPSVSASGTKT HCCCCHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC DTKLIETPQSVSVISRDNLDARGIDTVAQALQYTAGVAVQTFGGDPRYDQARIRGFETNG CHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHEEEEECCC FSNFRDGLRDTANGSAYFSVFRNEPYGVQRIDVVKGPSSVMYGQSPPGGLIDLISKRPTD CHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEECCCCCCCHHHHHHHCCCCC HAFGEVVGLVGTADRLQGAFDVGGPIDKDKTVLYRLTGVLRDSDAQVAKFSDKVKDDRAY HHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHCCCCEE IAPAVTWRPTNDTTLTILSDYQHDVTGIASPLSVATVRGGKVVNMRALPLFLGDPSYNTF EEEEEEEECCCCCEEEEEECCCCHHHHCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCC DQTQYRVGYQFEHRFSDDLIVRSRARYGHVDLEYRSITQAGTPLDTQTVFPRNARRVLEN CCCEEEECEEEECCCCCCCEEECCCCCCCEEEEEHHHHCCCCCCCCCCCCCCHHHHHHCC SDSFGIDNHVIAKTWTGPLQHTVLIGTDYQAFKLDGESFGGLAPSIDVLNPVYGQPVAMP CCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCH TLRLQSYKQNLNQAGVYLQDQIKLQNWILTLGGRYDAAQQTILNRLTGVPQPNDDTAFTK HHHHHHHHHHHHHCCCEEEEHEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHH RAGLTYLFDNGLAPYVSYSESFLPTGGVDFNSNAFKPTKGKQYEGGIKFQPNRDLLFTAA HCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEE VFDLTQDNVLTADPNHLNYNIQTGQVNSRGLELEMLAKPMPGLNLLASYTLQNLKNTQSN EEECCCCCEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC NGDVGKMPVLIPRHMASAFADYTLQSGPLAGWGFGAGFRYIGESYMDILNTLTNDAYTVF CCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE DAGLHYRQPKGINLALNVKNIVNKDNAMCTATGGCQYISPRVITATASYRW ECCCCCCCCCCCEEEEEHHHHCCCCCCEEEECCCCEECCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]