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The map label for this gene is ygdK [C]

Identifier: 192290454

GI number: 192290454

Start: 2233149

End: 2233577

Strand: Reverse

Name: ygdK [C]

Synonym: Rpal_2061

Alternate gene names: 192290454

Gene position: 2233577-2233149 (Counterclockwise)

Preceding gene: 192290455

Following gene: 192290451

Centisome position: 38.89

GC content: 65.5

Gene sequence:

>429_bases
ATGACGATTGACGAGATCAGGGACAATTTCGCGCTGCTCGACGAGTGGGACGACCGCTATCGGTACGTGATCGAACTCGG
CCGCACGCTCGAGCCGATGCCCGAGGAAGAACACTCCGCTGCGAACAAAGTGCAGGGCTGCGCCAGCCAGGTGTGGCTGT
CGCGCAAGCTGACGCGCAACGCTAACGGCGACCCGATCCTGAGCTATCTCGGCGACAGCGATGCGCACATCGTCCGCGGC
CTGATCGCGATCCTGCTGACGCTGGTGTCGGGCCGTACGCCGAAGGAGATCCTGTCGGCCGAGCCGATCGCGGTGTTCGA
CGAACTCGGGTTCCGCGAGCACCTCACCCCGCAGCGCTCCAACGGCTTGCGCTCGATGATCGAGCGGATCAAGGCCGACG
CCCGCGACACCCTCGCCGCGTCGACCTGA

Upstream 100 bases:

>100_bases
TCGGAGCAGGCGATTCTCGCTTTCGACCGCCTGCGAACCCATATATCTGTCGGGATAGGTTCCATCGCGAACGAACCGCT
ACCGACAGATACGGGTCACG

Downstream 100 bases:

>100_bases
TCGCGATCGGCTCCGGCTGCTCCGCCGCTTTACGGCACCACGAACGCCGCATCGTCCGCCAGCCAGCTCCGCAGCCGCGG
CCTAGCCTGGTCGGCCCGCG

Product: Fe-S metabolism associated SufE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTIDEIRDNFALLDEWDDRYRYVIELGRTLEPMPEEEHSAANKVQGCASQVWLSRKLTRNANGDPILSYLGDSDAHIVRG
LIAILLTLVSGRTPKEILSAEPIAVFDELGFREHLTPQRSNGLRSMIERIKADARDTLAAST

Sequences:

>Translated_142_residues
MTIDEIRDNFALLDEWDDRYRYVIELGRTLEPMPEEEHSAANKVQGCASQVWLSRKLTRNANGDPILSYLGDSDAHIVRG
LIAILLTLVSGRTPKEILSAEPIAVFDELGFREHLTPQRSNGLRSMIERIKADARDTLAAST
>Mature_141_residues
TIDEIRDNFALLDEWDDRYRYVIELGRTLEPMPEEEHSAANKVQGCASQVWLSRKLTRNANGDPILSYLGDSDAHIVRGL
IAILLTLVSGRTPKEILSAEPIAVFDELGFREHLTPQRSNGLRSMIERIKADARDTLAAST

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=136, Percent_Identity=39.7058823529412, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI1787969, Length=118, Percent_Identity=41.5254237288136, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15949; Mature: 15818

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDEIRDNFALLDEWDDRYRYVIELGRTLEPMPEEEHSAANKVQGCASQVWLSRKLTRN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
ANGDPILSYLGDSDAHIVRGLIAILLTLVSGRTPKEILSAEPIAVFDELGFREHLTPQRS
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCHHHHCCCCCC
NGLRSMIERIKADARDTLAAST
CCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIDEIRDNFALLDEWDDRYRYVIELGRTLEPMPEEEHSAANKVQGCASQVWLSRKLTRN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
ANGDPILSYLGDSDAHIVRGLIAILLTLVSGRTPKEILSAEPIAVFDELGFREHLTPQRS
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCHHHHCCCCCC
NGLRSMIERIKADARDTLAAST
CCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7756693; 11481430 [H]