| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is fabG [H]
Identifier: 192290350
GI number: 192290350
Start: 2113429
End: 2114208
Strand: Reverse
Name: fabG [H]
Synonym: Rpal_1957
Alternate gene names: 192290350
Gene position: 2114208-2113429 (Counterclockwise)
Preceding gene: 192290354
Following gene: 192290349
Centisome position: 36.81
GC content: 65.38
Gene sequence:
>780_bases ATGAGCATTTTCGATTTGAGCGGCCGCGTCGCGGTCGTCACCGGGGGCAACGGTGGTATCGGCCTCGGTATGGCACAGGC TCTGGCTGCTGCGGGCTGTAACGTGTCGATCTGGGGTCGCAACGCGGTCAAGAATCACGCCGCGCTCGCTACCATGGCAA ATGCTCCCGGCAAGGTCGAAGCTCAGATCTGCGACGTCACCGATCCGGCTTCGGTGAAGGCCGCGATGGACGCGACGCTG AAGGCATTCGGCCGGGTCGACGGCTGCTTCGCCAATGCGGGCATCGGCGGCGGCGGCCGGCAGGCTTTCATCGACCGTAC CGAAGAGCAATGGCGCTCGATGTTCGCCACCAATCTCGACGGCGTGTTCCACGCCTTCCAGGCCGCGGCCCGGCACATGA CCGAGCGCGCCGCCGACGGCGATCCGTTCGGCCGGCTGGTCGCGACCTCGAGCCTCGCTTCGATCTTCGGCACCGCGCGC AACGAGCACTACGCGGCCACCAAGGCGGCGATCAATGCACTGGTCCGCGCGCTAGCCGTCGAACTCGCCCGCTATGGCGT CACCGCCAATGCGATCCTGCCGGGCTGGATCAAGAGCGACATGACCGCCGGCATCATGGGCAACGACAAATTCGTCGCCA ACGTGATGCCGCGTATTCCTGTGCGGCGGTTCGGCGAGCCGGAAGATTTCGGCGGCATCGCGGTGTACCTGATGAGCAAG GCGTCGTCGTATCACACCGCCGATACTTTCGTGATCGACGGCGGCTACACCGCGTTCTGA
Upstream 100 bases:
>100_bases TTTGATTTTTGCGACGCGCTTGTCCATGGTCCTGCATTGATCACCGCGCGCGCCTGGCCCGCACGGTGTAGCGCGCAACA AACAAAAATGGAAACGCTGG
Downstream 100 bases:
>100_bases CATCCACTTACCAACCTTCGATCAATAAGAAGCAAGAAAATGCCGACCACGCTCCCGCCCGAACGCATTCCCGTCATCGC CGGTGTCGGCGAAATCGCAG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MSIFDLSGRVAVVTGGNGGIGLGMAQALAAAGCNVSIWGRNAVKNHAALATMANAPGKVEAQICDVTDPASVKAAMDATL KAFGRVDGCFANAGIGGGGRQAFIDRTEEQWRSMFATNLDGVFHAFQAAARHMTERAADGDPFGRLVATSSLASIFGTAR NEHYAATKAAINALVRALAVELARYGVTANAILPGWIKSDMTAGIMGNDKFVANVMPRIPVRRFGEPEDFGGIAVYLMSK ASSYHTADTFVIDGGYTAF
Sequences:
>Translated_259_residues MSIFDLSGRVAVVTGGNGGIGLGMAQALAAAGCNVSIWGRNAVKNHAALATMANAPGKVEAQICDVTDPASVKAAMDATL KAFGRVDGCFANAGIGGGGRQAFIDRTEEQWRSMFATNLDGVFHAFQAAARHMTERAADGDPFGRLVATSSLASIFGTAR NEHYAATKAAINALVRALAVELARYGVTANAILPGWIKSDMTAGIMGNDKFVANVMPRIPVRRFGEPEDFGGIAVYLMSK ASSYHTADTFVIDGGYTAF >Mature_258_residues SIFDLSGRVAVVTGGNGGIGLGMAQALAAAGCNVSIWGRNAVKNHAALATMANAPGKVEAQICDVTDPASVKAAMDATLK AFGRVDGCFANAGIGGGGRQAFIDRTEEQWRSMFATNLDGVFHAFQAAARHMTERAADGDPFGRLVATSSLASIFGTARN EHYAATKAAINALVRALAVELARYGVTANAILPGWIKSDMTAGIMGNDKFVANVMPRIPVRRFGEPEDFGGIAVYLMSKA SSYHTADTFVIDGGYTAF
Specific function: Catalyzes A Reversible Reduction Of 5-Ketoglutanate To Form D-Gluconate. Dependent On Nadp, Almost Inactive With NAD. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=29.3233082706767, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=31.0483870967742, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI7705925, Length=258, Percent_Identity=29.4573643410853, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=26.6409266409266, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=27.7777777777778, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=26.3779527559055, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI59889578, Length=201, Percent_Identity=30.3482587064677, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=28.7937743190661, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=30.7317073170732, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=25.609756097561, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4504505, Length=218, Percent_Identity=29.3577981651376, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI7706318, Length=204, Percent_Identity=27.9411764705882, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI66933014, Length=218, Percent_Identity=26.1467889908257, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=28.9099526066351, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI223718074, Length=211, Percent_Identity=28.9099526066351, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4758504, Length=240, Percent_Identity=26.25, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=32.8063241106719, Blast_Score=138, Evalue=4e-34, Organism=Escherichia coli, GI1789208, Length=258, Percent_Identity=32.1705426356589, Blast_Score=131, Evalue=4e-32, Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=32.6848249027237, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=31.8897637795276, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=33.2046332046332, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=27.710843373494, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=28.8, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=30.5220883534137, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=27.3764258555133, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=29.8449612403101, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI2367365, Length=254, Percent_Identity=25.9842519685039, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1789057, Length=271, Percent_Identity=26.5682656826568, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786701, Length=219, Percent_Identity=30.1369863013699, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=34.1269841269841, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=32.8063241106719, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=29.811320754717, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=30.6818181818182, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=26.4822134387352, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=27.3764258555133, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=29.0566037735849, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17561402, Length=261, Percent_Identity=28.735632183908, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=29.520295202952, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI115534694, Length=260, Percent_Identity=26.9230769230769, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=28.8389513108614, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=29.5880149812734, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562910, Length=274, Percent_Identity=27.3722627737226, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=29.6296296296296, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=28.2442748091603, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=25.7462686567164, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=27.037037037037, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=27.843137254902, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=26.7175572519084, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17568967, Length=249, Percent_Identity=30.9236947791165, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=25.9398496240602, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=27.5590551181102, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=25.9259259259259, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=27.2030651340996, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=25.8426966292135, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=27.1653543307087, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17536651, Length=261, Percent_Identity=25.2873563218391, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=28.740157480315, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=30.078125, Blast_Score=107, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6322861, Length=243, Percent_Identity=27.1604938271605, Blast_Score=77, Evalue=3e-15, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=30.7392996108949, Blast_Score=104, Evalue=7e-23, Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=31.25, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=26.8482490272374, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=28.0632411067194, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=27.34375, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI18859837, Length=221, Percent_Identity=31.6742081447964, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640492, Length=217, Percent_Identity=27.6497695852535, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=28.7937743190661, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24644339, Length=263, Percent_Identity=25.8555133079848, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=27.7227722772277, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI17737361, Length=236, Percent_Identity=27.5423728813559, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 27015; Mature: 26884
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFDLSGRVAVVTGGNGGIGLGMAQALAAAGCNVSIWGRNAVKNHAALATMANAPGKVE CCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEE AQICDVTDPASVKAAMDATLKAFGRVDGCFANAGIGGGGRQAFIDRTEEQWRSMFATNLD EEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCHH GVFHAFQAAARHMTERAADGDPFGRLVATSSLASIFGTARNEHYAATKAAINALVRALAV HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ELARYGVTANAILPGWIKSDMTAGIMGNDKFVANVMPRIPVRRFGEPEDFGGIAVYLMSK HHHHHCCCCCCCCCCHHHHCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCCCCEEEEEECC ASSYHTADTFVIDGGYTAF CCCCCCCCEEEECCCCCCC >Mature Secondary Structure SIFDLSGRVAVVTGGNGGIGLGMAQALAAAGCNVSIWGRNAVKNHAALATMANAPGKVE CEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEE AQICDVTDPASVKAAMDATLKAFGRVDGCFANAGIGGGGRQAFIDRTEEQWRSMFATNLD EEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCHH GVFHAFQAAARHMTERAADGDPFGRLVATSSLASIFGTARNEHYAATKAAINALVRALAV HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ELARYGVTANAILPGWIKSDMTAGIMGNDKFVANVMPRIPVRRFGEPEDFGGIAVYLMSK HHHHHCCCCCCCCCCHHHHCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCCCCEEEEEECC ASSYHTADTFVIDGGYTAF CCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10192388; 10684935; 10871362 [H]