| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290254
Identifier: 192290254
GI number: 192290254
Start: 1995842
End: 1996522
Strand: Reverse
Name: 192290254
Synonym: Rpal_1858
Alternate gene names: NA
Gene position: 1996522-1995842 (Counterclockwise)
Preceding gene: 192290255
Following gene: 192290252
Centisome position: 34.76
GC content: 65.79
Gene sequence:
>681_bases ATGACCGGAGTAAGCCATCTCGGAATGCTTCAGCTCGCGATCCTGATCGGGATCGCGGCGCCGGCATCCCACGCCCAAGC GCAGTGGTGGCCGAACAAAGAGCCGGTCGATTACGAAGACTGTATCGCCAAGGGGGAAACCAAGGCGACCACCCCGGATG TCAAAGCCGCGCTGCAAACCCAATGCGATGCCAAGTTCGCCGGAAGGCGGAAGGCCGGCGGCGGCTACACCTATTTCGAC TTCATGCAGAACCGCAGCTTCGATATCGCCGGCCCCAATCCGACGGCCGCCGAGCTGCGGAAGATCGACGAGGAGTACAC CGCGTTTCTCGACGAGCGCCGCCGGCAGATGATTCTGGCGGCGTTCACCGCGAAACAGCAGCAGATCGCCGCCCTGCAAC AACAGGCGACCGCCACCGAGCCTCCGCCGCCACTGCCGAAGCCCCGCGTCGTCACCGTCAAGCCGCGCGACGACGCCGAC AAGCCCCGTGTCGCGGCCGATAAATCCCGTCCACGCGCTGAGAAGAAGCGTGCCGAACGCAAACGCTCGCCGGAGCCGCG CTACGCCTGCGGCAGCAATGATCCGGTGTCCTGCGGCCTGACCCAGCTGTCGGCCGGCTTCAGCGCGGTGAAGACCTCGC TGTTCGGGACATCGACGACGACCACCGCCCAGCGTCGCTGA
Upstream 100 bases:
>100_bases GTGTATTCAGCGCTCAGCACCGCCCCGGCGCCTTGACAAACCGCCTCGTCCCCGGCGGAATCCGCTATAATTACGCCGCT ACTCAAGCCGCGGGACAGGC
Downstream 100 bases:
>100_bases GCGCAGACGACGCCGACTCCACCCGGCGATTCAGCGGCCGGAGCGCTGGATCACATCCATCAGCTCCGCGATCTTCTGGC GCTGGTCGGCTTTGTCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MTGVSHLGMLQLAILIGIAAPASHAQAQWWPNKEPVDYEDCIAKGETKATTPDVKAALQTQCDAKFAGRRKAGGGYTYFD FMQNRSFDIAGPNPTAAELRKIDEEYTAFLDERRRQMILAAFTAKQQQIAALQQQATATEPPPPLPKPRVVTVKPRDDAD KPRVAADKSRPRAEKKRAERKRSPEPRYACGSNDPVSCGLTQLSAGFSAVKTSLFGTSTTTTAQRR
Sequences:
>Translated_226_residues MTGVSHLGMLQLAILIGIAAPASHAQAQWWPNKEPVDYEDCIAKGETKATTPDVKAALQTQCDAKFAGRRKAGGGYTYFD FMQNRSFDIAGPNPTAAELRKIDEEYTAFLDERRRQMILAAFTAKQQQIAALQQQATATEPPPPLPKPRVVTVKPRDDAD KPRVAADKSRPRAEKKRAERKRSPEPRYACGSNDPVSCGLTQLSAGFSAVKTSLFGTSTTTTAQRR >Mature_225_residues TGVSHLGMLQLAILIGIAAPASHAQAQWWPNKEPVDYEDCIAKGETKATTPDVKAALQTQCDAKFAGRRKAGGGYTYFDF MQNRSFDIAGPNPTAAELRKIDEEYTAFLDERRRQMILAAFTAKQQQIAALQQQATATEPPPPLPKPRVVTVKPRDDADK PRVAADKSRPRAEKKRAERKRSPEPRYACGSNDPVSCGLTQLSAGFSAVKTSLFGTSTTTTAQRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24735; Mature: 24604
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGVSHLGMLQLAILIGIAAPASHAQAQWWPNKEPVDYEDCIAKGETKATTPDVKAALQT CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH QCDAKFAGRRKAGGGYTYFDFMQNRSFDIAGPNPTAAELRKIDEEYTAFLDERRRQMILA HHCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AFTAKQQQIAALQQQATATEPPPPLPKPRVVTVKPRDDADKPRVAADKSRPRAEKKRAER HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH KRSPEPRYACGSNDPVSCGLTQLSAGFSAVKTSLFGTSTTTTAQRR HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TGVSHLGMLQLAILIGIAAPASHAQAQWWPNKEPVDYEDCIAKGETKATTPDVKAALQT CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH QCDAKFAGRRKAGGGYTYFDFMQNRSFDIAGPNPTAAELRKIDEEYTAFLDERRRQMILA HHCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AFTAKQQQIAALQQQATATEPPPPLPKPRVVTVKPRDDADKPRVAADKSRPRAEKKRAER HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH KRSPEPRYACGSNDPVSCGLTQLSAGFSAVKTSLFGTSTTTTAQRR HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA