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The map label for this gene is des [H]

Identifier: 192290190

GI number: 192290190

Start: 1925670

End: 1926743

Strand: Reverse

Name: des [H]

Synonym: Rpal_1793

Alternate gene names: 192290190

Gene position: 1926743-1925670 (Counterclockwise)

Preceding gene: 192290191

Following gene: 192290188

Centisome position: 33.54

GC content: 63.31

Gene sequence:

>1074_bases
ATGCCCTCGAACATGCCCCATGACGCAGAGGCCCCGGTCTCAGACGCGCGGCTTTGGACTCGCATTCTGGCCGAATACGG
CACGCCAAGCCGGTCGCGCAGCATCGCCGAGCTGACGATCACCGCCTTGCCGCTGGTGGCGCTGTGGAGTGCGGCCTGGT
TCGTGTACTCGATGGGACACGCCTGGGCTTCGTTGCTGATCGCTATTCCGGCGGCCGGGTTTCTACTCCGCCTGTTCATG
ATCCAGCACGACTGCGGCCACGGCGCATTCTTCAGCAAGCGACAAGCAAACGACTGGGTCGGCCGGGTGATCGGCGTGAT
CACGCTGACGCCCTACGATTGCTGGCGTCGCCAGCATGCCACGCATCACGCCACCACCGGCAATCTCGATCGTCGCGGCG
TCGGCGATCTCGATACGCTGACCGTGCGCGAATATAGCGAGCTGAGTTGGTGGGGCCGTTTGAAATATCGTCTCTACCGC
AACCCGCTGGTGATGTTCGGCCTCGGACCGGCCTACGTGTTTCTACTGCAACAGCGGCTTCCGGTCGGACTGATGCGCGA
TGGCTGGCGGCCTTGGGTGAGTGCGATGGCCACCAATGCGGCGATCGCCGGCATCGTGGTGACGCTCACCTGGTTCATCG
GCATCAAGGCATTCCTGCTGGTGCATCTGCCGATCATGCTACTGGCCGCGACTGCCGGGGTGTGGCTGTTCTACGTTCAG
CATCAGTTCGAGACCACGACGTGGGAGCACAACGAGCGCTGGAGCCTGCATCAAGCCGCGCTATATGGCAGCTCATACTA
CGATCTGCCGGCACCGCTGAGCTGGTTCACGGCCAATATCGGGATGCACCACGTGCATCATCTGGCGAGCCGCATTCCGT
ATTATCGCCTGCCGCGCGTGCTGCACGATCACCCCGAACTTCGCGCCATCGGCCGCGTCACGTTGTGGCAGAGCTTCCGT
TGCATCCCGCTGGCCTTGTGGGACGAGGCCCAGCGACGTCTGGTGTCGTTCCGCGACGTCCGCGCCCAAAAGCAGCAGCA
AGCAACCGTGGGTCTCGCAACGCGGCAGCTGTAG

Upstream 100 bases:

>100_bases
ATCGACTGCAATCGCCATTCTCGTTCGCATCCAGTCACGGTGGCGCACGCACGCGCACCTTGTCCCCTTTCATCACGTGC
GATCGCAGGACCTCTTCGCC

Downstream 100 bases:

>100_bases
AAGGACTACGAGTAAACAGCAGCGCGTCGCGCGCCGCGACGCAGGTGCGTCGGGCTCAGGCGTGCTCGGTCGCCGCAAGA
CGCGTGGAGCGCCGGTCGCG

Product: fatty acid desaturase

Products: NA

Alternate protein names: Delta(5) acyl-lipid desaturase; Delta(5) desaturase [H]

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MPSNMPHDAEAPVSDARLWTRILAEYGTPSRSRSIAELTITALPLVALWSAAWFVYSMGHAWASLLIAIPAAGFLLRLFM
IQHDCGHGAFFSKRQANDWVGRVIGVITLTPYDCWRRQHATHHATTGNLDRRGVGDLDTLTVREYSELSWWGRLKYRLYR
NPLVMFGLGPAYVFLLQQRLPVGLMRDGWRPWVSAMATNAAIAGIVVTLTWFIGIKAFLLVHLPIMLLAATAGVWLFYVQ
HQFETTTWEHNERWSLHQAALYGSSYYDLPAPLSWFTANIGMHHVHHLASRIPYYRLPRVLHDHPELRAIGRVTLWQSFR
CIPLALWDEAQRRLVSFRDVRAQKQQQATVGLATRQL

Sequences:

>Translated_357_residues
MPSNMPHDAEAPVSDARLWTRILAEYGTPSRSRSIAELTITALPLVALWSAAWFVYSMGHAWASLLIAIPAAGFLLRLFM
IQHDCGHGAFFSKRQANDWVGRVIGVITLTPYDCWRRQHATHHATTGNLDRRGVGDLDTLTVREYSELSWWGRLKYRLYR
NPLVMFGLGPAYVFLLQQRLPVGLMRDGWRPWVSAMATNAAIAGIVVTLTWFIGIKAFLLVHLPIMLLAATAGVWLFYVQ
HQFETTTWEHNERWSLHQAALYGSSYYDLPAPLSWFTANIGMHHVHHLASRIPYYRLPRVLHDHPELRAIGRVTLWQSFR
CIPLALWDEAQRRLVSFRDVRAQKQQQATVGLATRQL
>Mature_356_residues
PSNMPHDAEAPVSDARLWTRILAEYGTPSRSRSIAELTITALPLVALWSAAWFVYSMGHAWASLLIAIPAAGFLLRLFMI
QHDCGHGAFFSKRQANDWVGRVIGVITLTPYDCWRRQHATHHATTGNLDRRGVGDLDTLTVREYSELSWWGRLKYRLYRN
PLVMFGLGPAYVFLLQQRLPVGLMRDGWRPWVSAMATNAAIAGIVVTLTWFIGIKAFLLVHLPIMLLAATAGVWLFYVQH
QFETTTWEHNERWSLHQAALYGSSYYDLPAPLSWFTANIGMHHVHHLASRIPYYRLPRVLHDHPELRAIGRVTLWQSFRC
IPLALWDEAQRRLVSFRDVRAQKQQQATVGLATRQL

Specific function: Catalyzes the introduction of a cis-double bond at the delta(5) position of existing saturated fatty acids attached to membrane phospholipids. It is not strictly specific for palmitic acid (C16) but can also accept C14 as well as C18 species to yield unsa

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: 1.14.99.-

Molecular weight: Translated: 40844; Mature: 40713

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSNMPHDAEAPVSDARLWTRILAEYGTPSRSRSIAELTITALPLVALWSAAWFVYSMGH
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AWASLLIAIPAAGFLLRLFMIQHDCGHGAFFSKRQANDWVGRVIGVITLTPYDCWRRQHA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEECCHHHHHHHCC
THHATTGNLDRRGVGDLDTLTVREYSELSWWGRLKYRLYRNPLVMFGLGPAYVFLLQQRL
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHEECCCEEEEECCHHHHHHHHHHC
PVGLMRDGWRPWVSAMATNAAIAGIVVTLTWFIGIKAFLLVHLPIMLLAATAGVWLFYVQ
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HQFETTTWEHNERWSLHQAALYGSSYYDLPAPLSWFTANIGMHHVHHLASRIPYYRLPRV
HHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCHH
LHDHPELRAIGRVTLWQSFRCIPLALWDEAQRRLVSFRDVRAQKQQQATVGLATRQL
HHCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PSNMPHDAEAPVSDARLWTRILAEYGTPSRSRSIAELTITALPLVALWSAAWFVYSMGH
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AWASLLIAIPAAGFLLRLFMIQHDCGHGAFFSKRQANDWVGRVIGVITLTPYDCWRRQHA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEECCHHHHHHHCC
THHATTGNLDRRGVGDLDTLTVREYSELSWWGRLKYRLYRNPLVMFGLGPAYVFLLQQRL
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHEECCCEEEEECCHHHHHHHHHHC
PVGLMRDGWRPWVSAMATNAAIAGIVVTLTWFIGIKAFLLVHLPIMLLAATAGVWLFYVQ
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HQFETTTWEHNERWSLHQAALYGSSYYDLPAPLSWFTANIGMHHVHHLASRIPYYRLPRV
HHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCHH
LHDHPELRAIGRVTLWQSFRCIPLALWDEAQRRLVSFRDVRAQKQQQATVGLATRQL
HHCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9555904; 9384377 [H]