| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290185
Identifier: 192290185
GI number: 192290185
Start: 1922858
End: 1923220
Strand: Reverse
Name: 192290185
Synonym: Rpal_1788
Alternate gene names: NA
Gene position: 1923220-1922858 (Counterclockwise)
Preceding gene: 192290187
Following gene: 192290184
Centisome position: 33.48
GC content: 60.88
Gene sequence:
>363_bases ATGAAGCTCCCAGGCCCCGATCACCCGATCTCGATCACGGCCAATCCGAACGGCGTCCGGATCCGCGCGGACGGCAAGGT GATCGCCGAGACCCGCCGGGCGCTGACGCTGCAGGAGGCGAGCTACCCGCCGGTGCAGTACATTCCCCGGGAAGACGCCG ACATGCGGCTGCTGGAAAAAACCGCACGTGTCACTCATTGCCCGTACAAGGGCGATGCCAGCTATTTCAGTATCGTCGCC GGGGGCGAACCGCAGGCCAACGCGGTCTGGAGCTACGAGAATCCATTTCCGGCTATGGCGGAGATCGCCGGTTATCTGGC ATTCTATCCGCAAAAAGTTCAAATCGAAGAATTCAAACCCTAG
Upstream 100 bases:
>100_bases CATCCTATATGGCAGTGCGTCCCTTTCAAAGCCACCACGCCGGCTCATCGCGGCGAGGTGATGGTGACGCTGGTCCGAAT CGCACCCGAGAGATCCGCCC
Downstream 100 bases:
>100_bases CAATTCGCCGAAGAGGCGATTCAGCTATTGCGCAGTATCGTAATTCACCGGCGGCATCGCACGGGGCTATCGTCGTGACT GTAACCTATCCCACCACCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 120; Mature: 120
Protein sequence:
>120_residues MKLPGPDHPISITANPNGVRIRADGKVIAETRRALTLQEASYPPVQYIPREDADMRLLEKTARVTHCPYKGDASYFSIVA GGEPQANAVWSYENPFPAMAEIAGYLAFYPQKVQIEEFKP
Sequences:
>Translated_120_residues MKLPGPDHPISITANPNGVRIRADGKVIAETRRALTLQEASYPPVQYIPREDADMRLLEKTARVTHCPYKGDASYFSIVA GGEPQANAVWSYENPFPAMAEIAGYLAFYPQKVQIEEFKP >Mature_120_residues MKLPGPDHPISITANPNGVRIRADGKVIAETRRALTLQEASYPPVQYIPREDADMRLLEKTARVTHCPYKGDASYFSIVA GGEPQANAVWSYENPFPAMAEIAGYLAFYPQKVQIEEFKP
Specific function: Unknown
COG id: COG2343
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13350; Mature: 13350
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPGPDHPISITANPNGVRIRADGKVIAETRRALTLQEASYPPVQYIPREDADMRLLEK CCCCCCCCCEEEEECCCCEEEEECCEEEECHHHEEEEECCCCCCEEECCCCCCHHHHHHH TARVTHCPYKGDASYFSIVAGGEPQANAVWSYENPFPAMAEIAGYLAFYPQKVQIEEFKP HHHHEECCCCCCCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCC >Mature Secondary Structure MKLPGPDHPISITANPNGVRIRADGKVIAETRRALTLQEASYPPVQYIPREDADMRLLEK CCCCCCCCCEEEEECCCCEEEEECCEEEECHHHEEEEECCCCCCEEECCCCCCHHHHHHH TARVTHCPYKGDASYFSIVAGGEPQANAVWSYENPFPAMAEIAGYLAFYPQKVQIEEFKP HHHHEECCCCCCCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA