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The map label for this gene is crtD [H]

Identifier: 192290104

GI number: 192290104

Start: 1828987

End: 1830546

Strand: Reverse

Name: crtD [H]

Synonym: Rpal_1706

Alternate gene names: 192290104

Gene position: 1830546-1828987 (Counterclockwise)

Preceding gene: 192290122

Following gene: 192290103

Centisome position: 31.87

GC content: 67.56

Gene sequence:

>1560_bases
ATGCGAGACCAGACCGCGAGGAATCGCGTCGTAGTGATCGGCGCCGGCGTCGCGGGACTGACGTCTGCGCTGACGCTGGC
CGCACGCGGCTTCGACGTCACCGTGCTTGAACGCGCCGCCGCCCCCGGCGGCAAAATGCGCGAAGTGGCCATCGGTCCGG
CGCGGATCGACAGCGGCCCGACCGTGTTCACGATGCGCTGGGTGTTCGAGGAGCTGTTCGCCGGCATCGGCCTGAACTTC
TCCGACCATGTGCGCCTACGTCCTTTGTCGGTCCTGGCCCGCCACGCCTGGGACGACACCCAGCATCTCGACCTGTTCGC
AGATGAGGCCCGCTCGGCCGATGCGATCGGCACATTCGCCGGTGCTGCGGAAGCGAAACGTTATAGGCAGTTTTGCGCCG
ACAGCCGGCGCATCTACGAGATTCTGGAAAAGCCATTCCTACGCGCCACCGCGCCGAGCCTGCCGAAGCTGGCGACCGCC
GGCGGCCTCAGCGGCCTGCTCGAGCTGCGCAAGATCCGCCCGTTCACTACGATGTGGAAAGCACTCGGCGATTACTTCCA
CGATCCGCGGATGCGGCAGTTGTTCGGCCGCTATGCGACCTATTGCGGTTCCTCGCCCTTCGATGCGCCCGCGACGCTGA
TGCTGGTCGCACATGTCGAACACGAAGGCGTCTGGATCATCGAAGGCGGCATGCATGCGCTGGCGCAGGCGCTCGCCAAT
TGCGCCACCAGCTTCGGCGCCACGATTCGCTACGAGCAGAGCGTGCGCGAGGTGATGGTCTCCGGCGGACGCGCTGCCGG
CGTGGTCCTGGAAAGCGGCGAGCGGATCGAAGCGCATTCGGTGATCGTCAACGCCGATGTCGGTGCGCTGCCGGCCGGAC
TGTTCGGCGAAGCGGTGCGCTCTGCGGCCGCACCGTTGGCACCGCGGTTGCGATCGCTGTCGGCCATGACCTGGAGCATG
GTGGCGAAAACTGAGGGCTTCCCGCTGAGCCGCCATTCGGTGTTCTTCTCGCGAGATTATCCACGGGAGTTCGCCGAGAT
CTTCGGCCGCGGCGAGGTGCCGAGCGAGCCGACCGTGTATGTCTGCGCTCAGGACCGCATCGACGACGAGGCACGCTTGG
CGGCAGGCGGCGAAGAGGAATTGCTGGTGTTGATCAACGCGCCGCCGGTCGGCGATCGCAAGAGCTTCGATCAAGCCGAG
GTCGCGCGCGCCGCCGAACGCGCGTTCGGCGTGCTGCAGCGTTGCGGACTGCGGATCGATGCCGATCCGGGCAAGACCCA
GGTGACAACGCCGGCGGATTTCAACCGGCTGTTCCCGGCCACCGGCGGCGCGCTGTATGGTCGCGCCTCGCACGGCTGGA
GTGCCTCGTTCGAACGTCCCGGAGCGGGTACAAAGATCGCCGGCCTTTATCTGGCCGGCGGCAGCACCCACCCGGGCCCC
GGCGTGCCGATGGCCGCCCTGTCGGGTCGCGCTGCGGCGGCGACCCTGTTCGCCGATCTCGGCTTCACACCCGCCGGCCC
GAAGCCTGCGCTTCGCCCGGCTGCTTCCAAGACGACGTGA

Upstream 100 bases:

>100_bases
GCACAAGTGTCAGTTTAACTTGTCATGCCAAACTGTAAGTTATTGTGGACACCTGTCAATGATATGGCTCAAAGACAGCT
GAGCCGGAGTGAGAAAACGG

Downstream 100 bases:

>100_bases
GATTATGATTGCCTGGCCTAACGAAACCGACGAACGCCGCGCCGGATTCAATGTCGACATTCCGCACAACGGCTACGCTT
GGTGGTACATCGACGCGATC

Product: phytoene desaturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MRDQTARNRVVVIGAGVAGLTSALTLAARGFDVTVLERAAAPGGKMREVAIGPARIDSGPTVFTMRWVFEELFAGIGLNF
SDHVRLRPLSVLARHAWDDTQHLDLFADEARSADAIGTFAGAAEAKRYRQFCADSRRIYEILEKPFLRATAPSLPKLATA
GGLSGLLELRKIRPFTTMWKALGDYFHDPRMRQLFGRYATYCGSSPFDAPATLMLVAHVEHEGVWIIEGGMHALAQALAN
CATSFGATIRYEQSVREVMVSGGRAAGVVLESGERIEAHSVIVNADVGALPAGLFGEAVRSAAAPLAPRLRSLSAMTWSM
VAKTEGFPLSRHSVFFSRDYPREFAEIFGRGEVPSEPTVYVCAQDRIDDEARLAAGGEEELLVLINAPPVGDRKSFDQAE
VARAAERAFGVLQRCGLRIDADPGKTQVTTPADFNRLFPATGGALYGRASHGWSASFERPGAGTKIAGLYLAGGSTHPGP
GVPMAALSGRAAAATLFADLGFTPAGPKPALRPAASKTT

Sequences:

>Translated_519_residues
MRDQTARNRVVVIGAGVAGLTSALTLAARGFDVTVLERAAAPGGKMREVAIGPARIDSGPTVFTMRWVFEELFAGIGLNF
SDHVRLRPLSVLARHAWDDTQHLDLFADEARSADAIGTFAGAAEAKRYRQFCADSRRIYEILEKPFLRATAPSLPKLATA
GGLSGLLELRKIRPFTTMWKALGDYFHDPRMRQLFGRYATYCGSSPFDAPATLMLVAHVEHEGVWIIEGGMHALAQALAN
CATSFGATIRYEQSVREVMVSGGRAAGVVLESGERIEAHSVIVNADVGALPAGLFGEAVRSAAAPLAPRLRSLSAMTWSM
VAKTEGFPLSRHSVFFSRDYPREFAEIFGRGEVPSEPTVYVCAQDRIDDEARLAAGGEEELLVLINAPPVGDRKSFDQAE
VARAAERAFGVLQRCGLRIDADPGKTQVTTPADFNRLFPATGGALYGRASHGWSASFERPGAGTKIAGLYLAGGSTHPGP
GVPMAALSGRAAAATLFADLGFTPAGPKPALRPAASKTT
>Mature_519_residues
MRDQTARNRVVVIGAGVAGLTSALTLAARGFDVTVLERAAAPGGKMREVAIGPARIDSGPTVFTMRWVFEELFAGIGLNF
SDHVRLRPLSVLARHAWDDTQHLDLFADEARSADAIGTFAGAAEAKRYRQFCADSRRIYEILEKPFLRATAPSLPKLATA
GGLSGLLELRKIRPFTTMWKALGDYFHDPRMRQLFGRYATYCGSSPFDAPATLMLVAHVEHEGVWIIEGGMHALAQALAN
CATSFGATIRYEQSVREVMVSGGRAAGVVLESGERIEAHSVIVNADVGALPAGLFGEAVRSAAAPLAPRLRSLSAMTWSM
VAKTEGFPLSRHSVFFSRDYPREFAEIFGRGEVPSEPTVYVCAQDRIDDEARLAAGGEEELLVLINAPPVGDRKSFDQAE
VARAAERAFGVLQRCGLRIDADPGKTQVTTPADFNRLFPATGGALYGRASHGWSASFERPGAGTKIAGLYLAGGSTHPGP
GVPMAALSGRAAAATLFADLGFTPAGPKPALRPAASKTT

Specific function: Converts hydroxyneurosporene to demethylspheroidene or methoxyneurosporene to spheroidene [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17540238, Length=525, Percent_Identity=24.5714285714286, Blast_Score=93, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR000815
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 55340; Mature: 55340

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDQTARNRVVVIGAGVAGLTSALTLAARGFDVTVLERAAAPGGKMREVAIGPARIDSGP
CCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHCCCCCCEEEEEECCCEECCCC
TVFTMRWVFEELFAGIGLNFSDHVRLRPLSVLARHAWDDTQHLDLFADEARSADAIGTFA
CEEEHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHH
GAAEAKRYRQFCADSRRIYEILEKPFLRATAPSLPKLATAGGLSGLLELRKIRPFTTMWK
HHHHHHHHHHHHHCHHHHHHHHHCCHHHHCCCCCCCHHHHCCHHHHHHHHHCCHHHHHHH
ALGDYFHDPRMRQLFGRYATYCGSSPFDAPATLMLVAHVEHEGVWIIEGGMHALAQALAN
HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEECCCHHHHHHHHHH
CATSFGATIRYEQSVREVMVSGGRAAGVVLESGERIEAHSVIVNADVGALPAGLFGEAVR
HHHHHCCEEEEHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHH
SAAAPLAPRLRSLSAMTWSMVAKTEGFPLSRHSVFFSRDYPREFAEIFGRGEVPSEPTVY
HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCEEE
VCAQDRIDDEARLAAGGEEELLVLINAPPVGDRKSFDQAEVARAAERAFGVLQRCGLRID
EEECCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
ADPGKTQVTTPADFNRLFPATGGALYGRASHGWSASFERPGAGTKIAGLYLAGGSTHPGP
CCCCCCEECCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
GVPMAALSGRAAAATLFADLGFTPAGPKPALRPAASKTT
CCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRDQTARNRVVVIGAGVAGLTSALTLAARGFDVTVLERAAAPGGKMREVAIGPARIDSGP
CCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHCCCCCCEEEEEECCCEECCCC
TVFTMRWVFEELFAGIGLNFSDHVRLRPLSVLARHAWDDTQHLDLFADEARSADAIGTFA
CEEEHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHH
GAAEAKRYRQFCADSRRIYEILEKPFLRATAPSLPKLATAGGLSGLLELRKIRPFTTMWK
HHHHHHHHHHHHHCHHHHHHHHHCCHHHHCCCCCCCHHHHCCHHHHHHHHHCCHHHHHHH
ALGDYFHDPRMRQLFGRYATYCGSSPFDAPATLMLVAHVEHEGVWIIEGGMHALAQALAN
HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEECCCHHHHHHHHHH
CATSFGATIRYEQSVREVMVSGGRAAGVVLESGERIEAHSVIVNADVGALPAGLFGEAVR
HHHHHCCEEEEHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHH
SAAAPLAPRLRSLSAMTWSMVAKTEGFPLSRHSVFFSRDYPREFAEIFGRGEVPSEPTVY
HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCEEE
VCAQDRIDDEARLAAGGEEELLVLINAPPVGDRKSFDQAEVARAAERAFGVLQRCGLRID
EEECCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
ADPGKTQVTTPADFNRLFPATGGALYGRASHGWSASFERPGAGTKIAGLYLAGGSTHPGP
CCCCCCEECCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
GVPMAALSGRAAAATLFADLGFTPAGPKPALRPAASKTT
CCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1612412; 7721699 [H]