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The map label for this gene is bphB [H]

Identifier: 192290075

GI number: 192290075

Start: 1796330

End: 1798642

Strand: Reverse

Name: bphB [H]

Synonym: Rpal_1677

Alternate gene names: 192290075

Gene position: 1798642-1796330 (Counterclockwise)

Preceding gene: 192290085

Following gene: 192290074

Centisome position: 31.31

GC content: 67.88

Gene sequence:

>2313_bases
ATGCACTCTGGCCTTGACAATTCTGCCGAGCTCAGGGTTTCGGACTTCGACCCGATCACCCTCGCTGGTGGGACGCGTAC
AGAGGTCCTGCCCGGTGCGATTCAGCCCCACGCCGCTCTGTTGGCGCTGGCTCCGGCGGATTTGACCATCGTCCACGCCG
CCGGCGCGACCGCATCGCTGCTCGGCGCGGCGGCGGAGTTGTTGCCTGGCACCGCCGCCTCCACGGCCTTTTCGTCCGAC
CAGATTGCGAGGCTGCAGGCGCTTGCCACTGCCGAGCGCTGGATCGAGCGGCCGCAGCACGCCTTCACACTGAATGCGCC
GGACGCCACCCCGATCGACGTCATCGTCCATCATGCCTCGGGGCTGCTGGTGGTGGAGCTCGATCCGCGCCGCGAACCCG
CGCCGGAAAATTCGCTGGCGCTGGTGCAGTCGATGATCCGGCGGGCACGGCCGGCGCCGAACCTCCAAGGCTTCTGCGAC
GCGATGGCCGCCGAGCTGCGCAGCGTGACCGGCTTCGACCGGGTGATGGTGTACCGCTTTGCGCGGGACGGCAGCGCCGA
CGTGATCGCCGAAGCGCGCGGTCCTGAAACCAGCCCGTTCCTCGGCTTGCGCGATCCGCAACCGGACATCTCAAATCAGC
CGGGGTCCATCAGCCGGATCCGGGTGCAGCCCGACGTTCATGCTCCCGCTGCACCGCTGTGGCCGGCGCACAGTCCGCGC
AACGGCCTCGCGCTTGATCTGTCGTTCAGCGCGACTCGCAGCGCCTCCCCCGAACACAGGCTGTATCTGGCCCAACTCGG
CGTCGCCGCGTCGCTTTCGCTGTCGCTGGTGGTCGAAGGCGAGTTGTGGGGCCTGATCGTCTGCCATCATGCCACCCCGC
GGTTTCTGCCTTACCGGATGCGCGAAGCCTGCGCGCTGTTCGCCGAGATGGCATCGCTGCAGCTCGAGACGCGGCTTGCC
GCCGATCAGCTAGCCGCCCGGCTGCGCAGCACGCGCATCCACGAAGAGCTGGTCACGCGGATGAGCCAGGAGTCGGATCT
CGCCGAAGGGCTGATCCGGTTCTATCCGAATCTGCTCGACTTCATCCCGGCCGCCGGCGTCGGCCTATGGATCGACGGCC
AGTTCACGGGGATCGGTGCGACACCGGGACCTGCACAAGTGGCCGCGATGATGGGATGGTTGCACGGCGTCCCGCACGAC
GGCGTGTACCACACCGATTGCCTGGCGCTGGCGTATCCGCCCGCCAAGGCGTTCGCCGGCTGCGCCAGCGGCCTCCTGGC
GCTGTCGCTTTCCAACACGCCGCACAACTACGTGCTGTGGTTCCGCCCTGAAGTTGTCCGCGTCGTCACCTGGGCAGGCA
TGCCCAACAAGCCGGTCGGCGTCGATGCTGGCGCGCCCCGAACGCCGAAAGGCTGCGCGTCGAGCTGGCAAGAATCGGTG
CGGCTGCACGGCGAGCCGTGGCTCGACACGGATGTCGATGCAGCGCACCGGCTGCGCGAGTCGCTGCTCGACGTCGTGCT
GCGGCGGATCGACGGCATCGCCCGCGAGCGACGGTCGGCGCAGTTGCTGCAGGAACAGTTGATGCGTCAGGTCGAGCTCG
GCCTGAGCCGTTCCAAGGACGTCGCCAAGACGCTGCAGGAAGAGAAGCGGCGGCGGGTGCTGGTCGAGGCCGACCTCTCG
AAGGTGCTGCGTCGGACAGTCGAAGATCAGGAAGCCGAACGCCTACGGATCGCCCGCGAACTGCACGACACGCTCGGCCA
GTCGCTGACCCTGTTGCAGCTCGGCTTCGACAAGCTCGGCCAAGCCGCCGGCGACAATCCCGAATTGCAGCAGCGCATCG
CCGAGATGAAGAGCCTGACCGCCGACGTCGGCCGCCAGGCCAACCGCCTCGCCTGGGAAATCCGCCCGACCGCACTCGAC
GACCTAGGCATCCAGACCGCGATCCAGAACCTGCTCGACTCCTGGAGCGAGAAGTCGAGCATCGAGTTCGACCTGCACAT
GACGCTCGGCTCGCGCCGGCTGCCGTCCCCGGTCGAGACCACGCTGTACCGCGTGCTGCAGGAAGCGCTCACCAACGTGG
TGCGCCATGCCTCGGCCCGCCATGTCAGCGTCATTCTGCAACTCGGCGACGACCAGGTGACGATGATCGTCGAGGATGAC
GGCTGCGGCTTCGTCACCGCCGGCCGTAAGCCGCCGTCTGGGCGGCTGGGCTTGCTCGGCATCCGTGAGCGGCTGTCGCT
GGTCGGCGGCTCGCTCGAAATCGAATCCGCGCCCGGCAAGGGCACTGCGCTGTACGCGCGCATTCCGCTGTGA

Upstream 100 bases:

>100_bases
CTTTGTCAATTTAACATGACACTGACGACTGTCCGTGTCATACCGGACATCCTCAAACCGGTCCGACGAGTCCCGGACAC
GGAAAATTGAGTAGATAGTG

Downstream 100 bases:

>100_bases
CCAGATGAAAGCAACCGCGATGGACCAGCAATCCCCTTCCCGACTGCGGGTGTTTATCGCCGACGATCACCCGGTGGTGC
TCAGCGGCATGAAGGCGCTG

Product: GAF sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 770; Mature: 770

Protein sequence:

>770_residues
MHSGLDNSAELRVSDFDPITLAGGTRTEVLPGAIQPHAALLALAPADLTIVHAAGATASLLGAAAELLPGTAASTAFSSD
QIARLQALATAERWIERPQHAFTLNAPDATPIDVIVHHASGLLVVELDPRREPAPENSLALVQSMIRRARPAPNLQGFCD
AMAAELRSVTGFDRVMVYRFARDGSADVIAEARGPETSPFLGLRDPQPDISNQPGSISRIRVQPDVHAPAAPLWPAHSPR
NGLALDLSFSATRSASPEHRLYLAQLGVAASLSLSLVVEGELWGLIVCHHATPRFLPYRMREACALFAEMASLQLETRLA
ADQLAARLRSTRIHEELVTRMSQESDLAEGLIRFYPNLLDFIPAAGVGLWIDGQFTGIGATPGPAQVAAMMGWLHGVPHD
GVYHTDCLALAYPPAKAFAGCASGLLALSLSNTPHNYVLWFRPEVVRVVTWAGMPNKPVGVDAGAPRTPKGCASSWQESV
RLHGEPWLDTDVDAAHRLRESLLDVVLRRIDGIARERRSAQLLQEQLMRQVELGLSRSKDVAKTLQEEKRRRVLVEADLS
KVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFDKLGQAAGDNPELQQRIAEMKSLTADVGRQANRLAWEIRPTALD
DLGIQTAIQNLLDSWSEKSSIEFDLHMTLGSRRLPSPVETTLYRVLQEALTNVVRHASARHVSVILQLGDDQVTMIVEDD
GCGFVTAGRKPPSGRLGLLGIRERLSLVGGSLEIESAPGKGTALYARIPL

Sequences:

>Translated_770_residues
MHSGLDNSAELRVSDFDPITLAGGTRTEVLPGAIQPHAALLALAPADLTIVHAAGATASLLGAAAELLPGTAASTAFSSD
QIARLQALATAERWIERPQHAFTLNAPDATPIDVIVHHASGLLVVELDPRREPAPENSLALVQSMIRRARPAPNLQGFCD
AMAAELRSVTGFDRVMVYRFARDGSADVIAEARGPETSPFLGLRDPQPDISNQPGSISRIRVQPDVHAPAAPLWPAHSPR
NGLALDLSFSATRSASPEHRLYLAQLGVAASLSLSLVVEGELWGLIVCHHATPRFLPYRMREACALFAEMASLQLETRLA
ADQLAARLRSTRIHEELVTRMSQESDLAEGLIRFYPNLLDFIPAAGVGLWIDGQFTGIGATPGPAQVAAMMGWLHGVPHD
GVYHTDCLALAYPPAKAFAGCASGLLALSLSNTPHNYVLWFRPEVVRVVTWAGMPNKPVGVDAGAPRTPKGCASSWQESV
RLHGEPWLDTDVDAAHRLRESLLDVVLRRIDGIARERRSAQLLQEQLMRQVELGLSRSKDVAKTLQEEKRRRVLVEADLS
KVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFDKLGQAAGDNPELQQRIAEMKSLTADVGRQANRLAWEIRPTALD
DLGIQTAIQNLLDSWSEKSSIEFDLHMTLGSRRLPSPVETTLYRVLQEALTNVVRHASARHVSVILQLGDDQVTMIVEDD
GCGFVTAGRKPPSGRLGLLGIRERLSLVGGSLEIESAPGKGTALYARIPL
>Mature_770_residues
MHSGLDNSAELRVSDFDPITLAGGTRTEVLPGAIQPHAALLALAPADLTIVHAAGATASLLGAAAELLPGTAASTAFSSD
QIARLQALATAERWIERPQHAFTLNAPDATPIDVIVHHASGLLVVELDPRREPAPENSLALVQSMIRRARPAPNLQGFCD
AMAAELRSVTGFDRVMVYRFARDGSADVIAEARGPETSPFLGLRDPQPDISNQPGSISRIRVQPDVHAPAAPLWPAHSPR
NGLALDLSFSATRSASPEHRLYLAQLGVAASLSLSLVVEGELWGLIVCHHATPRFLPYRMREACALFAEMASLQLETRLA
ADQLAARLRSTRIHEELVTRMSQESDLAEGLIRFYPNLLDFIPAAGVGLWIDGQFTGIGATPGPAQVAAMMGWLHGVPHD
GVYHTDCLALAYPPAKAFAGCASGLLALSLSNTPHNYVLWFRPEVVRVVTWAGMPNKPVGVDAGAPRTPKGCASSWQESV
RLHGEPWLDTDVDAAHRLRESLLDVVLRRIDGIARERRSAQLLQEQLMRQVELGLSRSKDVAKTLQEEKRRRVLVEADLS
KVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFDKLGQAAGDNPELQQRIAEMKSLTADVGRQANRLAWEIRPTALD
DLGIQTAIQNLLDSWSEKSSIEFDLHMTLGSRRLPSPVETTLYRVLQEALTNVVRHASARHVSVILQLGDDQVTMIVEDD
GCGFVTAGRKPPSGRLGLLGIRERLSLVGGSLEIESAPGKGTALYARIPL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI87082311, Length=229, Percent_Identity=31.8777292576419, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1788812, Length=192, Percent_Identity=30.7291666666667, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1787474, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 83535; Mature: 83535

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSGLDNSAELRVSDFDPITLAGGTRTEVLPGAIQPHAALLALAPADLTIVHAAGATASL
CCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCHHEEEECCCCEEEEEECCCHHHH
LGAAAELLPGTAASTAFSSDQIARLQALATAERWIERPQHAFTLNAPDATPIDVIVHHAS
HHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEECCC
GLLVVELDPRREPAPENSLALVQSMIRRARPAPNLQGFCDAMAAELRSVTGFDRVMVYRF
CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHC
ARDGSADVIAEARGPETSPFLGLRDPQPDISNQPGSISRIRVQPDVHAPAAPLWPAHSPR
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
NGLALDLSFSATRSASPEHRLYLAQLGVAASLSLSLVVEGELWGLIVCHHATPRFLPYRM
CCEEEEEECCCCCCCCCHHEEEHHHHCHHHCCEEEEEEECCEEEEEEEECCCCCCCHHHH
REACALFAEMASLQLETRLAADQLAARLRSTRIHEELVTRMSQESDLAEGLIRFYPNLLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIPAAGVGLWIDGQFTGIGATPGPAQVAAMMGWLHGVPHDGVYHTDCLALAYPPAKAFAG
HHCCCCCEEEECCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEECCEEEEECCCHHHHHH
CASGLLALSLSNTPHNYVLWFRPEVVRVVTWAGMPNKPVGVDAGAPRTPKGCASSWQESV
HHHCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
RLHGEPWLDTDVDAAHRLRESLLDVVLRRIDGIARERRSAQLLQEQLMRQVELGLSRSKD
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
VAKTLQEEKRRRVLVEADLSKVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFDKLG
HHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCHHHHH
QAAGDNPELQQRIAEMKSLTADVGRQANRLAWEIRPTALDDLGIQTAIQNLLDSWSEKSS
HCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCC
IEFDLHMTLGSRRLPSPVETTLYRVLQEALTNVVRHASARHVSVILQLGDDQVTMIVEDD
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECC
GCGFVTAGRKPPSGRLGLLGIRERLSLVGGSLEIESAPGKGTALYARIPL
CCEEEECCCCCCCCCEEHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCC
>Mature Secondary Structure
MHSGLDNSAELRVSDFDPITLAGGTRTEVLPGAIQPHAALLALAPADLTIVHAAGATASL
CCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCHHEEEECCCCEEEEEECCCHHHH
LGAAAELLPGTAASTAFSSDQIARLQALATAERWIERPQHAFTLNAPDATPIDVIVHHAS
HHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEECCC
GLLVVELDPRREPAPENSLALVQSMIRRARPAPNLQGFCDAMAAELRSVTGFDRVMVYRF
CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHC
ARDGSADVIAEARGPETSPFLGLRDPQPDISNQPGSISRIRVQPDVHAPAAPLWPAHSPR
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
NGLALDLSFSATRSASPEHRLYLAQLGVAASLSLSLVVEGELWGLIVCHHATPRFLPYRM
CCEEEEEECCCCCCCCCHHEEEHHHHCHHHCCEEEEEEECCEEEEEEEECCCCCCCHHHH
REACALFAEMASLQLETRLAADQLAARLRSTRIHEELVTRMSQESDLAEGLIRFYPNLLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIPAAGVGLWIDGQFTGIGATPGPAQVAAMMGWLHGVPHDGVYHTDCLALAYPPAKAFAG
HHCCCCCEEEECCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEECCEEEEECCCHHHHHH
CASGLLALSLSNTPHNYVLWFRPEVVRVVTWAGMPNKPVGVDAGAPRTPKGCASSWQESV
HHHCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
RLHGEPWLDTDVDAAHRLRESLLDVVLRRIDGIARERRSAQLLQEQLMRQVELGLSRSKD
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
VAKTLQEEKRRRVLVEADLSKVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFDKLG
HHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCHHHHH
QAAGDNPELQQRIAEMKSLTADVGRQANRLAWEIRPTALDDLGIQTAIQNLLDSWSEKSS
HCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCC
IEFDLHMTLGSRRLPSPVETTLYRVLQEALTNVVRHASARHVSVILQLGDDQVTMIVEDD
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECC
GCGFVTAGRKPPSGRLGLLGIRERLSLVGGSLEIESAPGKGTALYARIPL
CCEEEECCCCCCCCCEEHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]