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The map label for this gene is ygcF [H]

Identifier: 192289792

GI number: 192289792

Start: 1456490

End: 1457122

Strand: Reverse

Name: ygcF [H]

Synonym: Rpal_1382

Alternate gene names: 192289792

Gene position: 1457122-1456490 (Counterclockwise)

Preceding gene: 192289793

Following gene: 192289791

Centisome position: 25.37

GC content: 65.88

Gene sequence:

>633_bases
GTGAGCTACGCGGTTAAGGAGATATTTCTGACGTTGCAGGGCGAAGGCGCCCATGCCGGCCGCGCAGCCGTGTTCTGCCG
CTTCGCCGGTTGCAATCTGTGGACCGGCCGCGAACAGGACCGCGATCAGGCGACCTGCAAATTCTGCGATACGGACTTCA
TCGGCACCGACGGTACGCTCGGCGGCCGCTACGCCAGCGCCGAGCATCTCGCCGACACCATCGCCGAGCAGTGGGTCGGA
GATGCGCGCGACCGCTACGTGGTGATCACCGGCGGCGAGCCGCTGCTGCAGCTTGACGGTGAACTGATCACCGCACTGCA
CGCGCGCGGCTTCGCGATTGGCGTGGAGACCAACGGCACGATCGAGCCGCCGGCCGGCATCGACTGGCTGTGCGTCAGCC
CGAAGGCCGGTGCCGAACTGCGCATCCGCCGCGGCGATGAGTTGAAGCTGGTGTATCCGCAGCCAGATGCGATGCCGGAA
GAGTTTGCGGCGCTCGAGTTCGAGCGGTTTTCGCTGCAACCGATGGACGGCCCGGACCGCGACGACAACACCACGCGCGC
AATCGCTTACTGCCTGAAGCACCCGCAGTGGCGGCTCAGCCTGCAGACTCACAAGATCACCGGCATCAGGTAG

Upstream 100 bases:

>100_bases
ATGCAGCCCGGCCTGCGCTCGCTCAACATCGCGATGGCCGCGGCCGTGGTGACCGGCGAGGCGTTGCGGCAAACCCAGTT
CGCACAGTGAGGACCGACGC

Downstream 100 bases:

>100_bases
CTCGCGCCGGCGTGATCCGGCTGTCATGACGAATCGCTAGGCTCATCGCGAGGTCAACAACCGAGCAGGAGCCGACCATG
GACTTGAAACCGGGCGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGGRYASAEHLADTIAEQWVG
DARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTIEPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPE
EFAALEFERFSLQPMDGPDRDDNTTRAIAYCLKHPQWRLSLQTHKITGIR

Sequences:

>Translated_210_residues
MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGGRYASAEHLADTIAEQWVG
DARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTIEPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPE
EFAALEFERFSLQPMDGPDRDDNTTRAIAYCLKHPQWRLSLQTHKITGIR
>Mature_209_residues
SYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGGRYASAEHLADTIAEQWVGD
ARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTIEPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEE
FAALEFERFSLQPMDGPDRDDNTTRAIAYCLKHPQWRLSLQTHKITGIR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=241, Percent_Identity=31.9502074688797, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23200; Mature: 23069

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTL
CCCEEEEEEEEEECCCCCCCCEEEEEEECCCEEECCCCCCCCCCEEEECCCCCCCCCCCC
GGRYASAEHLADTIAEQWVGDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGT
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCHHHHHHHCCCEEEEECCCCE
IEPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPDR
ECCCCCCEEEEECCCCCCEEEEECCCEEEEECCCCCCCCHHHHHEEEEEEECCCCCCCCC
DDNTTRAIAYCLKHPQWRLSLQTHKITGIR
CCCHHHHHHHHHCCCCEEEEEEEEEEECCC
>Mature Secondary Structure 
SYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTL
CCEEEEEEEEEECCCCCCCCEEEEEEECCCEEECCCCCCCCCCEEEECCCCCCCCCCCC
GGRYASAEHLADTIAEQWVGDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGT
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCHHHHHHHCCCEEEEECCCCE
IEPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPDR
ECCCCCCEEEEECCCCCCEEEEECCCEEEEECCCCCCCCHHHHHEEEEEEECCCCCCCCC
DDNTTRAIAYCLKHPQWRLSLQTHKITGIR
CCCHHHHHHHHHCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]