| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289785
Identifier: 192289785
GI number: 192289785
Start: 1451087
End: 1452019
Strand: Reverse
Name: 192289785
Synonym: Rpal_1375
Alternate gene names: NA
Gene position: 1452019-1451087 (Counterclockwise)
Preceding gene: 192289786
Following gene: 192289784
Centisome position: 25.28
GC content: 67.63
Gene sequence:
>933_bases ATGGCGCAGGCCGACGAGCATCGCATCCAGGAGACGCTGGCGGTTCGCCGCGCGGATGGCGAAAGCCGCTCGCTCGCAGC GTCGTTGCCACGCCTGATGCTTGAGGCCCGCCGGATTGCCAACAACGTCACACACGGACTGCACGGCCGCCGCCGCGCCG GCGCCGGCGAGAATTTCTGGCAGTATCGCCGCTTCGTCTCCGGCGAGCCGGCGCAGAACGTCGATTGGCGCCGCTCGGCG CGCGACGATCATCTCTATGTCCGTGAGCTGGAGTGGGAGGCCGCGCACACCGTCTGGCTGTGGCCGGACCGCTCACTGTC GATGGCCTTCGCCTCCAAGAGCGCGCGCGACAGCAAACTCGAGCGTGGCCTGATCGTCGCGTTCGCACTGGCGGACCTGC TGGTCGCCGGCGGCGAACGGGTCGGCATTCCCGGCCTGATGAACCCGACCTCGAGTAACAACGTCATCGACAAGATGGCG CAGGCGATCCTGCATGACACCGCCACGCGCAGCAGCCTGCCGCCGTCATTCGTGCCGTCGTCGCGGGCCGAAATCGTGGT GCTGTCCGACTTCTGGTCGCCGGTCAGCGAGATCCGGCAAATGCTCGCCGGCCTGTCGGCGTCCGGCGCCCACGGCACGC TGGTGCAGATCGTCGATCCCGCCGAAGAGAGCTTTCCCTATGCGGGGCGGGTCGAATTCGTCGAGCCCGAAGGTGGCGGC GCGATCACCGCCGGTCGCGCAGAGAAATGGGCCAGCGACTACATCGCTCTGGTCGCCGCGCATCGTGACGCAATCCGTGC CGAGACCTCCAAGCTCGATTGGCTGTTCTCGACCCACACCACCTCGCGCTCGGCCGCCGAGCTGCTGTTATTCCTGCACG CCGGCATGACCACCGCTAAAGACGCCGGCGGCAAAGCAGGACGTGGCGCATGA
Upstream 100 bases:
>100_bases AACCGATCCTGAAGCATCGTATGGCGCTGACCTTCTCGGCCCGCGCCGAAGGCCGCACCATTCCGGACGTGATCCAGAAG CTCAAGAGCCGGATCGGCTG
Downstream 100 bases:
>100_bases TCGGCGCCCTCCCCCTCTCGTTCGCACAGCCGCTGCTGCTGATTGGCCTGCTGGCGCTGCCGGCGCTGTGGTGGCTGCTG CGGGTGATGCCGCCGCGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MAQADEHRIQETLAVRRADGESRSLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFWQYRRFVSGEPAQNVDWRRSA RDDHLYVRELEWEAAHTVWLWPDRSLSMAFASKSARDSKLERGLIVAFALADLLVAGGERVGIPGLMNPTSSNNVIDKMA QAILHDTATRSSLPPSFVPSSRAEIVVLSDFWSPVSEIRQMLAGLSASGAHGTLVQIVDPAEESFPYAGRVEFVEPEGGG AITAGRAEKWASDYIALVAAHRDAIRAETSKLDWLFSTHTTSRSAAELLLFLHAGMTTAKDAGGKAGRGA
Sequences:
>Translated_310_residues MAQADEHRIQETLAVRRADGESRSLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFWQYRRFVSGEPAQNVDWRRSA RDDHLYVRELEWEAAHTVWLWPDRSLSMAFASKSARDSKLERGLIVAFALADLLVAGGERVGIPGLMNPTSSNNVIDKMA QAILHDTATRSSLPPSFVPSSRAEIVVLSDFWSPVSEIRQMLAGLSASGAHGTLVQIVDPAEESFPYAGRVEFVEPEGGG AITAGRAEKWASDYIALVAAHRDAIRAETSKLDWLFSTHTTSRSAAELLLFLHAGMTTAKDAGGKAGRGA >Mature_309_residues AQADEHRIQETLAVRRADGESRSLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFWQYRRFVSGEPAQNVDWRRSAR DDHLYVRELEWEAAHTVWLWPDRSLSMAFASKSARDSKLERGLIVAFALADLLVAGGERVGIPGLMNPTSSNNVIDKMAQ AILHDTATRSSLPPSFVPSSRAEIVVLSDFWSPVSEIRQMLAGLSASGAHGTLVQIVDPAEESFPYAGRVEFVEPEGGGA ITAGRAEKWASDYIALVAAHRDAIRAETSKLDWLFSTHTTSRSAAELLLFLHAGMTTAKDAGGKAGRGA
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33778; Mature: 33647
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQADEHRIQETLAVRRADGESRSLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFW CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH QYRRFVSGEPAQNVDWRRSARDDHLYVRELEWEAAHTVWLWPDRSLSMAFASKSARDSKL HHHHHHCCCCCCCCCHHHCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHCCHHHHHH ERGLIVAFALADLLVAGGERVGIPGLMNPTSSNNVIDKMAQAILHDTATRSSLPPSFVPS HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC SRAEIVVLSDFWSPVSEIRQMLAGLSASGAHGTLVQIVDPAEESFPYAGRVEFVEPEGGG CCCCEEEEHHHCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCCCCCEEEEECCCCCC AITAGRAEKWASDYIALVAAHRDAIRAETSKLDWLFSTHTTSRSAAELLLFLHAGMTTAK EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCCCCC DAGGKAGRGA CCCCCCCCCC >Mature Secondary Structure AQADEHRIQETLAVRRADGESRSLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFW CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH QYRRFVSGEPAQNVDWRRSARDDHLYVRELEWEAAHTVWLWPDRSLSMAFASKSARDSKL HHHHHHCCCCCCCCCHHHCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHCCHHHHHH ERGLIVAFALADLLVAGGERVGIPGLMNPTSSNNVIDKMAQAILHDTATRSSLPPSFVPS HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC SRAEIVVLSDFWSPVSEIRQMLAGLSASGAHGTLVQIVDPAEESFPYAGRVEFVEPEGGG CCCCEEEEHHHCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCCCCCEEEEECCCCCC AITAGRAEKWASDYIALVAAHRDAIRAETSKLDWLFSTHTTSRSAAELLLFLHAGMTTAK EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCCCCC DAGGKAGRGA CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA