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The map label for this gene is glcD [H]

Identifier: 192289676

GI number: 192289676

Start: 1339069

End: 1340496

Strand: Reverse

Name: glcD [H]

Synonym: Rpal_1266

Alternate gene names: 192289676

Gene position: 1340496-1339069 (Counterclockwise)

Preceding gene: 192289677

Following gene: 192289672

Centisome position: 23.34

GC content: 66.04

Gene sequence:

>1428_bases
ATGAACATCGTCAGCCAGCTTTCGCCCGTCACGCTCTCGCCCGAACTGATCGCGCGCTTCACCGCGATCGTCGGCGACAA
GCACGCGCTGACCGATCCTCTCGAGCTCGAAGCCTACATCACCGAGGAGCGCAATCTGTATCGCGGCCACTCGCCGCTGG
TGCTGCGTCCCGGCTCCACCGAGGAGGTGGTGGCGATCTGCAAACTGGCGAACGAGGCGCGTGTCGCGCTGGTGCCGCAA
GGCGGCAACACAGGTCTCGTCGGCGGGCAGACGCCGCACAATGGCGAGGTGGTGATTTCGCTGAAGCGGATGGACAAGAT
CCGCGAAATCGACACCTCGTCGAACACCATCACGGTCGAGGCCGGCGCCATCTTGCAGCGGGTGCAGGAGAAGGCCGCGG
AGGTCGACCGGCTGTTTCCGCTATCGCTCGGCGCGCAGGGAAGCTGCACCATCGGCGGCAACCTCTCGACCAATGCCGGC
GGCACCGCGGCGCTCGCCTATGGCTTGGCGCGTGACATGGCGCTCGGCGTCGAGGTCGTGCTCGCCGACGGCCGGGTGAT
GAACCTGCTGTCCAAACTGAAGAAGGACAACACCGGTTACGACCTGCGGGATCTGTTCATCGGCGCCGAAGGCACGCTCG
GGATCATCACCGCGGCGACGCTGAAGCTGTTTCCAAAGCCGCGCGCGGTCGAGACCGCGTTCGTCGGGCTGCAGTCGCCG
GACGACGCACTGAAGCTGCTCGGCATCGCGCAAGGAGAGGCCGCCGGCAATCTGACGAGCTTCGAACTGATCGCCGAGAC
GCCGCTCGATTTCTCGGTGCGGCACGCCAACAATCGCGACCCGCTCGAGGCGCGCTATCCGTGGTACGTGCTGATCGAAT
TGTCGTCGCCGCGCGACGACGCCCGCGCCGCACTGGAGTCGATTCTCGAGCGCGGCTTTGAAGACGGCATCGTGGTGGAC
GCGGCGATCGCGAATTCGGTGCAGCAGCAGCAGGCGTTCTGGAAACTGCGCGAGGAGATCTCGCCGGCACAGAAGCCGGA
AGGCGGCTCGATCAAGCACGACATCTCGGTGCCGGTCGCGGCGGTGCCGCAGTTCATCGAACAAGCCAACGCCGCGGTGG
TCGCCCTCATCCCGGGCGCGCGCCCTGTGCCGTTCGGCCATCTCGGCGACGGCAACATCCACTACAACGTCAGCCAGCCG
GTCGGCGCAGACAAGGCCGAGTTCCTGGCGCGCTGGCACGACGTCAGCCAGGTGGTGTTCGAGGTGGTGCTGCGGCTCGG
CGGCTCGATCTCGGCCGAACACGGCATCGGCGTGATGAAGCGCGACGAGCTTGCCGAGGTGAAGGACAAGACCGCGATCG
AGCTGATGCGGTCGATCAAGGCTCTGCTCGACCCGCACGGCATCATGAATCCCGGCAAAGTGGTGTAG

Upstream 100 bases:

>100_bases
GCGACGTCGTCGCAAGCGAAACGAAGCAATCCAAAGGCGTCTAAGACGCGTTTCGGATCGGTCGCTTCGCGCCTCGCGAC
GACAGGGAAGAGGAAACACC

Downstream 100 bases:

>100_bases
CTTCAGTCGGAACGGTCCGGGTCAACCGGACGGCGCGCCGAATGCCGGATGTGAATGATCCAAACCTCCGCGTTCTCGAC
GGAATAGTGAACGCGGTAGG

Product: FAD linked oxidase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MNIVSQLSPVTLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQ
GGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAG
GTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSP
DDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVD
AAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQP
VGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV

Sequences:

>Translated_475_residues
MNIVSQLSPVTLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQ
GGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAG
GTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSP
DDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVD
AAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQP
VGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV
>Mature_475_residues
MNIVSQLSPVTLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQ
GGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAG
GTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSP
DDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVD
AAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQP
VGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=474, Percent_Identity=39.873417721519, Blast_Score=310, Evalue=1e-84,
Organism=Homo sapiens, GI37595756, Length=486, Percent_Identity=31.0699588477366, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI37595754, Length=509, Percent_Identity=29.6660117878193, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI4501993, Length=179, Percent_Identity=30.7262569832402, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1789351, Length=454, Percent_Identity=30.1762114537445, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1787977, Length=519, Percent_Identity=24.0847784200385, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI48994907, Length=172, Percent_Identity=30.8139534883721, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI48994914, Length=169, Percent_Identity=26.6272189349112, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17534361, Length=444, Percent_Identity=34.9099099099099, Blast_Score=268, Evalue=7e-72,
Organism=Caenorhabditis elegans, GI71992373, Length=483, Percent_Identity=27.1221532091097, Blast_Score=152, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI71992381, Length=483, Percent_Identity=26.0869565217391, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI71992392, Length=361, Percent_Identity=28.808864265928, Blast_Score=129, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17556096, Length=230, Percent_Identity=25.6521739130435, Blast_Score=75, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6320023, Length=475, Percent_Identity=37.2631578947368, Blast_Score=323, Evalue=5e-89,
Organism=Saccharomyces cerevisiae, GI6320764, Length=478, Percent_Identity=34.9372384937238, Blast_Score=288, Evalue=1e-78,
Organism=Saccharomyces cerevisiae, GI6320027, Length=451, Percent_Identity=28.159645232816, Blast_Score=140, Evalue=5e-34,
Organism=Drosophila melanogaster, GI18921117, Length=470, Percent_Identity=41.063829787234, Blast_Score=327, Evalue=1e-89,
Organism=Drosophila melanogaster, GI24639277, Length=470, Percent_Identity=41.063829787234, Blast_Score=327, Evalue=1e-89,
Organism=Drosophila melanogaster, GI24639275, Length=470, Percent_Identity=41.063829787234, Blast_Score=327, Evalue=1e-89,
Organism=Drosophila melanogaster, GI24653753, Length=183, Percent_Identity=31.1475409836066, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50789; Mature: 50789

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIVSQLSPVTLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGST
CCHHHCCCCCEECHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCH
EEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVE
HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEE
AGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVV
HHHHHHHHHHHHHHHHHCCEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEE
LADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSP
EECCHHHHHHHHHHCCCCCCCHHHEEECCCCCEEHHEEEHHHCCCCCCCHHEEEEECCCC
DDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDD
HHHHHHHEEECCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHH
ARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVA
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHH
AVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVF
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
EVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNIVSQLSPVTLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGST
CCHHHCCCCCEECHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCH
EEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVE
HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEE
AGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVV
HHHHHHHHHHHHHHHHHCCEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEE
LADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSP
EECCHHHHHHHHHHCCCCCCCHHHEEECCCCCEEHHEEEHHHCCCCCCCHHEEEEECCCC
DDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDD
HHHHHHHEEECCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHH
ARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVA
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHH
AVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVF
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
EVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]