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The map label for this gene is araC [C]

Identifier: 192289610

GI number: 192289610

Start: 1270012

End: 1270902

Strand: Reverse

Name: araC [C]

Synonym: Rpal_1200

Alternate gene names: 192289610

Gene position: 1270902-1270012 (Counterclockwise)

Preceding gene: 192289612

Following gene: 192289605

Centisome position: 22.13

GC content: 65.77

Gene sequence:

>891_bases
ATGGCTCGCGCACACCGCAAAGCAGCAATTCCGATCTTCGCGCTGTACGGCGAGACGCCGGCAGCGCCGGTCGACATGCT
GCATGTCGAAGCGATCCAGTCGCGCAGCCGGTTGTATCAGTGGGAGATCGATGTCCACGCCCACCGCAGCCTGCATCAAA
TCCTCTGGATCGGCTCCGGAACGGCGACGATCGCGCTCGACGAGCAGCGCGTGCAGCGCGATGGGCCGGTCGCGGTGATC
GTGCCGCCCGGCGTCGTTCACGGCTTCAAGTTCTCGCCGCACACCGAAGGTCAGGTCTTCACCTTCAATCCGCACGCGAT
GATCGAAGGCGATGTGCCGGCGACCGGCCAGGCGCTCCGCGATCTGTTCGCCGCCGCCCGCATCCTGGAATTCGAGCCGG
ACGGCGCCGCAACGATGCGGATCGACAGATTGTTCGCCGAGCTCGCCGATGAATTCGCGACGCCGGATGCCGGCAACTCG
CCCGTACCGTTGTGGCTCGGCCGCGCCATCGTCTGGCGGTTGGCGCAACAGAGCGAGCGGCAAGCGCGCTATGCCGCGCG
CGGCGGTGATCAATTCACCCGCTTCTTGTTGCTGGTGGAGACGCATCATTGCGAGCATTGGCCGATCGCGCGCTACGCCG
ACGAGCTCGGCATGACGCCTGAACGCCTCAACCGTCTGGCGAAAGCCGAGACCGGCCAGAGCGCGCTCGACGTGGTCCAT
GCCCGCCTCACCCGCGAAGCCTGCCGCCGGCTGACGTATATAGCTGCGCCGATCTCCAAGCTCGCGTTCGAACTCGGCTT
CGAAGACCCTGCTTATTTCTGCCGCTTCTTCAAACGCCGCACCGGCCAGAGTCCCCGGGATTATCGGCGCGTGGTGAGCG
AGGAGGCGTAG

Upstream 100 bases:

>100_bases
GTTGCGGCAATCGTCGGAGTGTAGTTGCCACCACCTCTCCCCGTGAGACGCCGCGCTGACAAAAACTTGCACTTTTCCGA
CGTTCGGTCTTAGCTGCGGA

Downstream 100 bases:

>100_bases
TCCACCAAAGACTGTCATGGCTGGGCTTGCCCCGGCCATCCACGGCCACAAGCACTGCCTTGCCCAATTTCGTGGATACC
CGGGTCAAGCCCGGGCTTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MARAHRKAAIPIFALYGETPAAPVDMLHVEAIQSRSRLYQWEIDVHAHRSLHQILWIGSGTATIALDEQRVQRDGPVAVI
VPPGVVHGFKFSPHTEGQVFTFNPHAMIEGDVPATGQALRDLFAAARILEFEPDGAATMRIDRLFAELADEFATPDAGNS
PVPLWLGRAIVWRLAQQSERQARYAARGGDQFTRFLLLVETHHCEHWPIARYADELGMTPERLNRLAKAETGQSALDVVH
ARLTREACRRLTYIAAPISKLAFELGFEDPAYFCRFFKRRTGQSPRDYRRVVSEEA

Sequences:

>Translated_296_residues
MARAHRKAAIPIFALYGETPAAPVDMLHVEAIQSRSRLYQWEIDVHAHRSLHQILWIGSGTATIALDEQRVQRDGPVAVI
VPPGVVHGFKFSPHTEGQVFTFNPHAMIEGDVPATGQALRDLFAAARILEFEPDGAATMRIDRLFAELADEFATPDAGNS
PVPLWLGRAIVWRLAQQSERQARYAARGGDQFTRFLLLVETHHCEHWPIARYADELGMTPERLNRLAKAETGQSALDVVH
ARLTREACRRLTYIAAPISKLAFELGFEDPAYFCRFFKRRTGQSPRDYRRVVSEEA
>Mature_295_residues
ARAHRKAAIPIFALYGETPAAPVDMLHVEAIQSRSRLYQWEIDVHAHRSLHQILWIGSGTATIALDEQRVQRDGPVAVIV
PPGVVHGFKFSPHTEGQVFTFNPHAMIEGDVPATGQALRDLFAAARILEFEPDGAATMRIDRLFAELADEFATPDAGNSP
VPLWLGRAIVWRLAQQSERQARYAARGGDQFTRFLLLVETHHCEHWPIARYADELGMTPERLNRLAKAETGQSALDVVHA
RLTREACRRLTYIAAPISKLAFELGFEDPAYFCRFFKRRTGQSPRDYRRVVSEEA

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33304; Mature: 33173

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAHRKAAIPIFALYGETPAAPVDMLHVEAIQSRSRLYQWEIDVHAHRSLHQILWIGSG
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHEEEECCC
TATIALDEQRVQRDGPVAVIVPPGVVHGFKFSPHTEGQVFTFNPHAMIEGDVPATGQALR
CEEEEECHHHHHCCCCEEEEECCCEEECCCCCCCCCCEEEEECCCEEEECCCCCCHHHHH
DLFAAARILEFEPDGAATMRIDRLFAELADEFATPDAGNSPVPLWLGRAIVWRLAQQSER
HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
QARYAARGGDQFTRFLLLVETHHCEHWPIARYADELGMTPERLNRLAKAETGQSALDVVH
HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
ARLTREACRRLTYIAAPISKLAFELGFEDPAYFCRFFKRRTGQSPRDYRRVVSEEA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
ARAHRKAAIPIFALYGETPAAPVDMLHVEAIQSRSRLYQWEIDVHAHRSLHQILWIGSG
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHEEEECCC
TATIALDEQRVQRDGPVAVIVPPGVVHGFKFSPHTEGQVFTFNPHAMIEGDVPATGQALR
CEEEEECHHHHHCCCCEEEEECCCEEECCCCCCCCCCEEEEECCCEEEECCCCCCHHHHH
DLFAAARILEFEPDGAATMRIDRLFAELADEFATPDAGNSPVPLWLGRAIVWRLAQQSER
HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
QARYAARGGDQFTRFLLLVETHHCEHWPIARYADELGMTPERLNRLAKAETGQSALDVVH
HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
ARLTREACRRLTYIAAPISKLAFELGFEDPAYFCRFFKRRTGQSPRDYRRVVSEEA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA