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The map label for this gene is aidB [C]

Identifier: 192289455

GI number: 192289455

Start: 1092033

End: 1093814

Strand: Reverse

Name: aidB [C]

Synonym: Rpal_1028

Alternate gene names: 192289455

Gene position: 1093814-1092033 (Counterclockwise)

Preceding gene: 192289465

Following gene: 192289454

Centisome position: 19.04

GC content: 68.01

Gene sequence:

>1782_bases
ATGACCTATCGCGCTCCGATCGACGACATCCTTCTTTCCCTGAACCACGGTGCGGGATTGCAGGCCGCCGTCGCCGCCGG
CCATTTTGGCGACTACGACAGCGAGATCACCGCGCAAGTTCTGGACGAGGCGGGCAAATTCGCCAGCGACATCCTGGCGC
CGCTGAACCGGGTCGGTGACAAGCACGGCATCAAGCTGGAGCATGGCAAGGTCACCACCGCGCCGGGCTGGCCGGACGCC
TATCAGCGCTGGATCGCGGCCGGCTGGAATGCGGTGTCGGGACCGGAGGATTTCGGCGGCCAGGGCCTGCCGATGGCGGT
CAACGCAGCCTGCACCGAGATCTGGGCGTCGTCCAACATGGCGTTCGGGCTGTGCCCGCTGCTCACCCTGTCGGCGATCG
ACGCGCTGCACACCCACGGCAGCGACGCGCTGAAGCAGGTCTATCTCGGCAAGCTGATCTCCGGTGAGTGGACCGGCACG
ATGCAGCTCACCGAGCCGCAGGCCGGCTCCGACGTCGGCGCGCTGCGCACCCGCGCCGAGCGGGCCGCCGACGGCAGCTA
CAGGATCTTCGGCAGCAAGATCTTCATCACCTACGGCGACCACGACATGACCGACAACATCGTGCATTTCGTGCTCGCGC
GGCTACCGGATGCGCCGGCCGGCACCAAGGGCATCTCGCTGTTCCTGGTGCCGAAATTCCTCGTCAACGCCGACGGCACG
CTGGGCGCCCGCAACGACATCTATCCGAGCGGGGTCGAGCACAAGCTCGGCATCCACGCCTCGCCGACCTGCACCATGAC
GATGGGCGACCACGGCGGCGCAATCGGCTATCTGATCGGCGAAGAAAACCGCGGCATGCAGTGCATGTTCACGATGATGA
ACCAGGCCCGGCTCGCGGTCGGCCTCGAAGGCGTCGGCATTGCCGATCGCGCCTATCAGCAGGCGCTGGCCTATGCGCAG
GAGCGCAAGCAGGGCCGCGCGGTCGGCAGCGCCGGCCCTGGCTCAGATCCGATCATCAAGCACCCCGACGTCAAGCGCAC
GCTGCTGACGATGCGGGCGCTGATCGGCGCCGCACGCACGATCTGTTACTCGACCGCGGTGGCGCTCGACATCGCGGCGC
GCAGCACCGACCCGAAGGTCAAAGCCTCCGCCACGGCGCGCGGCGCGTTGCTGACGCCGATCGCCAAAGCGTTCTCCACC
GACATCGGCATCGAAGTCGCCTCGCTCGGCGTCCAGATCCATGGCGGCATGGGCTTCATCGAAGAGACCGGCGCCGCGCA
GCACTACCGCGACGCGCGGATTGCGCCGATCTATGAAGGCACCAACGGCATCCAGGCGATCGACCTCGTCACCCGCAAGC
TGGGCGCTAACGGCGGCGCCTCGGTGTTCGCGCTACTCGACGAGCTGACGCTGATCGTCAAGGATGTGGAAGCATCGAAC
GATCCGGGCTTCGGCCTCACCGGCCTGCGGCTGCGCGAGGGGCTGGAAGCGCTCGAACGCACCAGCCGTTATCTCCTGGA
CAAGCTCGGCAGCGCCACCAACGACGCGCTGGCCGGCGCCACTCCCTACCTGCGTCTGTTCGGCGCCACGCTCGGCGGCT
GCGCGCTGGCGGCCGAAGCGCTCGCGGCGCGCGATCTCGAAGGCATCAACGATCCGTCGCGCTACGTCGCGCTGGCACGG
TTCTTCGCCGAGACCGTCGCGGTGCAGGCCCCTGCGCTGGAGCGCAGCGTGGTCGACAGCGCGGCGTCTGTGGCCGGTGC
CGAGGCGGTGCTCACTGCCTAA

Upstream 100 bases:

>100_bases
GCCGGTCCGGCTGCAGAGCCGGCGCGACGCGACGGACGGTTGAGGGGAATGGGTTTTCGTGGAAAAAGGCCGGCATCCTT
CCGTCAGCCGGGACATCAAC

Downstream 100 bases:

>100_bases
GTTGATCCTTCGGCTTACGAAGAACTCCGGGGTGGCTGCGTCGCAGCCACCCTTTATTTTGTGTGCATCGCTTAAGGCCT
GCGCTTCGACAGAAATTCGT

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; BCAD; SCAD [H]

Number of amino acids: Translated: 593; Mature: 592

Protein sequence:

>593_residues
MTYRAPIDDILLSLNHGAGLQAAVAAGHFGDYDSEITAQVLDEAGKFASDILAPLNRVGDKHGIKLEHGKVTTAPGWPDA
YQRWIAAGWNAVSGPEDFGGQGLPMAVNAACTEIWASSNMAFGLCPLLTLSAIDALHTHGSDALKQVYLGKLISGEWTGT
MQLTEPQAGSDVGALRTRAERAADGSYRIFGSKIFITYGDHDMTDNIVHFVLARLPDAPAGTKGISLFLVPKFLVNADGT
LGARNDIYPSGVEHKLGIHASPTCTMTMGDHGGAIGYLIGEENRGMQCMFTMMNQARLAVGLEGVGIADRAYQQALAYAQ
ERKQGRAVGSAGPGSDPIIKHPDVKRTLLTMRALIGAARTICYSTAVALDIAARSTDPKVKASATARGALLTPIAKAFST
DIGIEVASLGVQIHGGMGFIEETGAAQHYRDARIAPIYEGTNGIQAIDLVTRKLGANGGASVFALLDELTLIVKDVEASN
DPGFGLTGLRLREGLEALERTSRYLLDKLGSATNDALAGATPYLRLFGATLGGCALAAEALAARDLEGINDPSRYVALAR
FFAETVAVQAPALERSVVDSAASVAGAEAVLTA

Sequences:

>Translated_593_residues
MTYRAPIDDILLSLNHGAGLQAAVAAGHFGDYDSEITAQVLDEAGKFASDILAPLNRVGDKHGIKLEHGKVTTAPGWPDA
YQRWIAAGWNAVSGPEDFGGQGLPMAVNAACTEIWASSNMAFGLCPLLTLSAIDALHTHGSDALKQVYLGKLISGEWTGT
MQLTEPQAGSDVGALRTRAERAADGSYRIFGSKIFITYGDHDMTDNIVHFVLARLPDAPAGTKGISLFLVPKFLVNADGT
LGARNDIYPSGVEHKLGIHASPTCTMTMGDHGGAIGYLIGEENRGMQCMFTMMNQARLAVGLEGVGIADRAYQQALAYAQ
ERKQGRAVGSAGPGSDPIIKHPDVKRTLLTMRALIGAARTICYSTAVALDIAARSTDPKVKASATARGALLTPIAKAFST
DIGIEVASLGVQIHGGMGFIEETGAAQHYRDARIAPIYEGTNGIQAIDLVTRKLGANGGASVFALLDELTLIVKDVEASN
DPGFGLTGLRLREGLEALERTSRYLLDKLGSATNDALAGATPYLRLFGATLGGCALAAEALAARDLEGINDPSRYVALAR
FFAETVAVQAPALERSVVDSAASVAGAEAVLTA
>Mature_592_residues
TYRAPIDDILLSLNHGAGLQAAVAAGHFGDYDSEITAQVLDEAGKFASDILAPLNRVGDKHGIKLEHGKVTTAPGWPDAY
QRWIAAGWNAVSGPEDFGGQGLPMAVNAACTEIWASSNMAFGLCPLLTLSAIDALHTHGSDALKQVYLGKLISGEWTGTM
QLTEPQAGSDVGALRTRAERAADGSYRIFGSKIFITYGDHDMTDNIVHFVLARLPDAPAGTKGISLFLVPKFLVNADGTL
GARNDIYPSGVEHKLGIHASPTCTMTMGDHGGAIGYLIGEENRGMQCMFTMMNQARLAVGLEGVGIADRAYQQALAYAQE
RKQGRAVGSAGPGSDPIIKHPDVKRTLLTMRALIGAARTICYSTAVALDIAARSTDPKVKASATARGALLTPIAKAFSTD
IGIEVASLGVQIHGGMGFIEETGAAQHYRDARIAPIYEGTNGIQAIDLVTRKLGANGGASVFALLDELTLIVKDVEASND
PGFGLTGLRLREGLEALERTSRYLLDKLGSATNDALAGATPYLRLFGATLGGCALAAEALAARDLEGINDPSRYVALARF
FAETVAVQAPALERSVVDSAASVAGAEAVLTA

Specific function: Has an optimum specificity for 4-carbon length fatty acyl-CoAs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=367, Percent_Identity=29.700272479564, Blast_Score=116, Evalue=6e-26,
Organism=Homo sapiens, GI4501857, Length=379, Percent_Identity=28.4960422163588, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI4501859, Length=419, Percent_Identity=25.0596658711217, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI21361497, Length=418, Percent_Identity=26.0765550239234, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI226958414, Length=361, Percent_Identity=26.0387811634349, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI226958412, Length=361, Percent_Identity=26.0387811634349, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI4557231, Length=367, Percent_Identity=29.1553133514986, Blast_Score=96, Evalue=9e-20,
Organism=Homo sapiens, GI187960098, Length=367, Percent_Identity=29.1553133514986, Blast_Score=96, Evalue=9e-20,
Organism=Homo sapiens, GI4557235, Length=420, Percent_Identity=25.2380952380952, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI76496475, Length=420, Percent_Identity=25.2380952380952, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI7656849, Length=385, Percent_Identity=26.4935064935065, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI87082384, Length=384, Percent_Identity=30.46875, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17506239, Length=414, Percent_Identity=28.9855072463768, Blast_Score=118, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17508101, Length=415, Percent_Identity=26.9879518072289, Blast_Score=118, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17569725, Length=424, Percent_Identity=29.7169811320755, Blast_Score=116, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17570075, Length=425, Percent_Identity=28.9411764705882, Blast_Score=113, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71985184, Length=354, Percent_Identity=26.271186440678, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI86563383, Length=410, Percent_Identity=26.3414634146341, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI86563381, Length=410, Percent_Identity=26.3414634146341, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17534899, Length=424, Percent_Identity=28.7735849056604, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17533517, Length=321, Percent_Identity=29.2834890965732, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17551932, Length=359, Percent_Identity=28.133704735376, Blast_Score=94, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17538396, Length=447, Percent_Identity=25.7270693512304, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17505929, Length=358, Percent_Identity=27.6536312849162, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71990804, Length=284, Percent_Identity=27.112676056338, Blast_Score=80, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI32563615, Length=240, Percent_Identity=30, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71985192, Length=280, Percent_Identity=25.3571428571429, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21356377, Length=382, Percent_Identity=29.0575916230367, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI21355753, Length=429, Percent_Identity=28.4382284382284, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24660351, Length=430, Percent_Identity=28.8372093023256, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI281363737, Length=355, Percent_Identity=26.4788732394366, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24646207, Length=424, Percent_Identity=26.8867924528302, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24666513, Length=355, Percent_Identity=28.169014084507, Blast_Score=101, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 62117; Mature: 61986

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYRAPIDDILLSLNHGAGLQAAVAAGHFGDYDSEITAQVLDEAGKFASDILAPLNRVGD
CCCCCCHHHHHEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
KHGIKLEHGKVTTAPGWPDAYQRWIAAGWNAVSGPEDFGGQGLPMAVNAACTEIWASSNM
CCCEEEECCEEECCCCCHHHHHHHHHHCCCCCCCCHHCCCCCCCEEHHHHHHHHHHCCCC
AFGLCPLLTLSAIDALHTHGSDALKQVYLGKLISGEWTGTMQLTEPQAGSDVGALRTRAE
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
RAADGSYRIFGSKIFITYGDHDMTDNIVHFVLARLPDAPAGTKGISLFLVPKFLVNADGT
HHCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHCCCCC
LGARNDIYPSGVEHKLGIHASPTCTMTMGDHGGAIGYLIGEENRGMQCMFTMMNQARLAV
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
GLEGVGIADRAYQQALAYAQERKQGRAVGSAGPGSDPIIKHPDVKRTLLTMRALIGAART
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ICYSTAVALDIAARSTDPKVKASATARGALLTPIAKAFSTDIGIEVASLGVQIHGGMGFI
HHHHHHHHHEEHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEECEEEECCCCCH
EETGAAQHYRDARIAPIYEGTNGIQAIDLVTRKLGANGGASVFALLDELTLIVKDVEASN
HHCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
DPGFGLTGLRLREGLEALERTSRYLLDKLGSATNDALAGATPYLRLFGATLGGCALAAEA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHH
LAARDLEGINDPSRYVALARFFAETVAVQAPALERSVVDSAASVAGAEAVLTA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEECC
>Mature Secondary Structure 
TYRAPIDDILLSLNHGAGLQAAVAAGHFGDYDSEITAQVLDEAGKFASDILAPLNRVGD
CCCCCHHHHHEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
KHGIKLEHGKVTTAPGWPDAYQRWIAAGWNAVSGPEDFGGQGLPMAVNAACTEIWASSNM
CCCEEEECCEEECCCCCHHHHHHHHHHCCCCCCCCHHCCCCCCCEEHHHHHHHHHHCCCC
AFGLCPLLTLSAIDALHTHGSDALKQVYLGKLISGEWTGTMQLTEPQAGSDVGALRTRAE
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
RAADGSYRIFGSKIFITYGDHDMTDNIVHFVLARLPDAPAGTKGISLFLVPKFLVNADGT
HHCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHCCCCC
LGARNDIYPSGVEHKLGIHASPTCTMTMGDHGGAIGYLIGEENRGMQCMFTMMNQARLAV
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
GLEGVGIADRAYQQALAYAQERKQGRAVGSAGPGSDPIIKHPDVKRTLLTMRALIGAART
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ICYSTAVALDIAARSTDPKVKASATARGALLTPIAKAFSTDIGIEVASLGVQIHGGMGFI
HHHHHHHHHEEHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEECEEEECCCCCH
EETGAAQHYRDARIAPIYEGTNGIQAIDLVTRKLGANGGASVFALLDELTLIVKDVEASN
HHCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
DPGFGLTGLRLREGLEALERTSRYLLDKLGSATNDALAGATPYLRLFGATLGGCALAAEA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHH
LAARDLEGINDPSRYVALARFFAETVAVQAPALERSVVDSAASVAGAEAVLTA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8399220; 7857927 [H]